RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA982106" and tax_phylum = "Deinococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA982106 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7341486 7341486 PRJNA982106_P_NODE_16146_length_277_cov_1.205882_g15906_i0 PRJNA982106 16146 277 1.205882 3.34029314 Deinococcus sp. 6GRE 47478 Bacteria Bacteria 165 7.829999999999998e-48   NR WP_230295000.1 2745873 g15906 i0 84.6 0.985559566787004 91 14 98.6 0 273 1 161 251 WP_230295000.1 LLM class flavin-dependent oxidoreductase [Deinococcus sp. 6GRE01] diamond 273 165 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. 6GRE01
17848686 17848686 PRJNA982106_P_NODE_25514_length_247_cov_0.885057_g25274_i0 PRJNA982106 25514 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 457 4.05e-124   NTclustered gi|155128|gb|J04639.1|TTHTAQP1A 271 g25274 i0 100 68.914979757085 247 0 100 0 1 247 1842 1596 Thermus aquaticus DNA polymerase (PolI) gene blastn 17022 457 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
27468852 27468852 PRJNA982106_P_NODE_27683_length_245_cov_0.895349_g27443_i0 PRJNA982106 27683 245 0.895349 2.19360505 Deinococcota bacterium 1913990 Bacteria Bacteria 102 4.83e-24   NR MEY4531373.1 1913990 g27443 i0 63 0.991836734693878 81 28 99.2 1 3 245 9 87 MEY4531373.1 hypothetical protein [Deinococcota bacterium] diamond 243 102 1 Bacteria   Thermotogati Deinococcota         Deinococcota bacterium
31258594 31258594 PRJNA982106_P_NODE_20375_length_251_cov_0.865169_g20135_i0 PRJNA982106 20375 251 0.865169 2.17157419 Meiothermus sp. 1955249 Bacteria Bacteria 109 1.12e-25   NR MDX2005340.1 1955249 g20135 i0 67.5 0.956175298804781 80 24 95.6 1 241 2 200 277 MDX2005340.1 G8 domain-containing protein [Meiothermus sp.] diamond 240 109 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;