RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA982106", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

  • Viridiplantae · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA982106 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29085142 29085142 PRJNA982106_P_NODE_19648_length_255_cov_1.604396_g19408_i0 PRJNA982106 19648 255 1.604396 4.0912098 Eukaryota 2759 Plants Plants 57.4 2.64e-7   NR KAI3439042.1 3077 g19408 i0 45.2 8.98823529411765 73 32 84.7 4 240 25 47 112 KAI3439042.1 hypothetical protein D9Q98_001452 [Chlorella vulgaris] diamond 2292 57.8 0.993079584775087 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
29363250 29363250 PRJNA982106_P_NODE_22969_length_249_cov_0.875000_g22729_i0 PRJNA982106 22969 249 0.875 2.17875 Bryopsis sp. KO-2 3115439 Plants Plants 52.4 2.57e-6   NR GMH37385.1 3041901 g22729 i0 40.5 0.891566265060241 74 42 89.2 1 227 6 1 72 GMH37385.1 hypothetical protein BSKO_05258 [Bryopsis sp. KO-2023] diamond 222 52.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;