RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA982106", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA982106 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4791701 4791701 PRJNA982106_P_NODE_12544_length_302_cov_2.519651_g12304_i0 PRJNA982106 12544 302 2.519651 7.60934602 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 152 2.69e-32   NTclustered gi|669149541|ref|XM_008612111.1| 1156394 g12304 i0 81.915 16.7152317880795 188 27 61 6 116 298 488 303 Saprolegnia diclina VS20 50S ribosomal protein L40e mRNA blastn 5048 152 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
8616999 8616999 PRJNA982106_P_NODE_31587_length_242_cov_0.911243_g31347_i0 PRJNA982106 31587 242 0.911243 2.20520806 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 172 1.6e-38   NTclustered gi|2795037829|ref|XM_067935177.1| 4785 g31347 i0 81.193 11.9917355371901 218 37 89 4 1 216 342 127 Phytophthora cinnamomi 60S ribosomal protein L11 (IUM83_10661), partial mRNA blastn 2902 172 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
13717661 13717661 PRJNA982106_P_NODE_3491_length_473_cov_2.395000_g3252_i0 PRJNA982106 3491 473 2.395 11.32835 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 267 1.51e-66   NTclustered gi|2795041697|ref|XM_067930728.1| 4785 g3252 i0 78.588 38.9217758985201 439 68 89 21 25 447 19 447 Phytophthora cinnamomi 60S ribosomal protein L27a (IUM83_06510), partial mRNA blastn 18410 267 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
32807550 32807550 PRJNA982106_P_NODE_18180_length_264_cov_1.403141_g17940_i0 PRJNA982106 18180 264 1.403141 3.70429224 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 51.2 4.82e-5   NR XP_067798631.1 4785 g17940 i0 41.7 1.02272727272727 60 24 55.7 1 161 15 344 403 XP_067798631.1 rna binding protein [Phytophthora cinnamomi] diamond 270 51.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;