RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA982106", tax_clade = "Opisthokonta" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA982106 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1271027 1271027 PRJNA982106_P_NODE_16821_length_273_cov_0.815000_g16581_i0 PRJNA982106 16821 273 0.815 2.22495 Glomeraceae 36751 Fungi Fungi 479 9.699999999999996e-131   NTclustered gi|12331210|emb|AJ309404.1| 150017 g16581 i0 100 94.8717948717949 259 0 95 0 14 272 314 56 Glomus sp. Glo1A 18S rRNA gene blastn 25900 479 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Glomerales Glomeraceae Glomus Glomus sp. Glo1A
8617124 8617124 PRJNA982106_P_NODE_9647_length_330_cov_1.727626_g9407_i0 PRJNA982106 9647 330 1.727626 5.7011658 Gamsiella multidivaricata 101098 Fungi Fungi 305 2.16e-78   NTclustered gi|2323772210|ref|XM_051554265.1| 101098 g9407 i0 87.266 80.5212121212121 267 34 81 0 64 330 802 1068 Gamsiella multidivaricata P-loop containing nucleoside triphosphate hydrolase protein (BC939DRAFT_441612), mRNA blastn 26572 305 1 Eukaryota Opisthokonta Fungi Mucoromycota Mortierellomycetes Mortierellales Mortierellaceae Gamsiella Gamsiella multidivaricata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;