RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA982106" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA982106 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27847500 27847500 PRJNA982106_P_NODE_31184_length_242_cov_0.911243_g30944_i0 PRJNA982106 31184 242 0.911243 2.20520806 Heterostelium album PN5 2086695 Evosea other_Eukaryota 59.7 3.39e-8   NR XP_020427235.1 670386 g30944 i0 50.9 0.65702479338843 53 25 64.5 1 6 161 56 108 XP_020427235.1 hypothetical protein PPL_11175 [Heterostelium album PN500] diamond 159 59.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
30468885 30468885 PRJNA982106_P_NODE_17873_length_266_cov_1.326425_g17633_i0 PRJNA982106 17873 266 1.326425 3.5282905 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 71.2 1.85e-13   NR XP_637111.1 352472 g17633 i0 53 0.744360902255639 66 31 74.4 0 199 2 7 72 XP_637111.1 hypothetical protein DDB_G0287601 [Dictyostelium discoideum AX4] diamond 198 71.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;