RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA981359", tax_phylum = "Spirochaetota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 6 ✖

tax_phylum 1

  • Spirochaetota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA981359 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12750060 12750060 PRJNA981359_S_NODE_50330_length_280_cov_1.507246_g50230_i0 PRJNA981359 50330 280 1.507246 4.2202888 Leptospira 171 Bacteria Bacteria 56.5 0.002   NTclustered gi|1016631450|gb|CP015052.1| 328971 g50230 i0 100 0.214285714285714 30 0 11 0 54 83 2461357 2461328 Leptospira borgpetersenii serovar Hardjo strain NVSL S 818 chromosome 1, partial sequence blastn 60 56.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira borgpetersenii
27531864 27531864 PRJNA981359_S_NODE_25283_length_341_cov_4.074627_g25183_i0 PRJNA981359 25283 341 4.0746270000000004 13.89447807 Spirochaetia bacterium 2053615 Bacteria Bacteria 74.7 9.15e-15   NR MFO7729640.1 2053615 g25183 i0 51.3 0.703812316715543 80 36 70.4 1 340 101 18 94 MFO7729640.1 hypothetical protein [Spirochaetia bacterium] diamond 240 74.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
27531867 27531867 PRJNA981359_S_NODE_57523_length_266_cov_1.186528_g57423_i0 PRJNA981359 57523 266 1.186528 3.15616448 Spirochaetia bacterium 2053615 Bacteria Bacteria 41.2 0.0458   NR MFO7729640.1 2053615 g57423 i0 41.9 0.484962406015038 43 25 48.5 0 72 200 52 94 MFO7729640.1 hypothetical protein [Spirochaetia bacterium] diamond 129 41.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
29836700 29836700 PRJNA981359_S_NODE_22071_length_352_cov_5.211470_g21971_i0 PRJNA981359 22071 352 5.21147 18.3443744 Spirochaetota bacterium 2202144 Bacteria Bacteria 45.1 0.0198   NR HOJ65312.1 2202144 g21971 i0 42.1 0.485795454545455 57 33 48.6 0 80 250 47 103 HOJ65312.1 Cache 3/Cache 2 fusion domain-containing protein [Spirochaetota bacterium] diamond 171 45.1 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
31321785 31321785 PRJNA981359_S_NODE_38375_length_306_cov_1.845494_g38275_i0 PRJNA981359 38375 306 1.845494 5.64721164 Spirochaetia bacterium 2053615 Bacteria Bacteria 80.1 4.55e-17   NR MFO7729640.1 2053615 g38275 i0 56.5 0.607843137254902 62 27 60.8 0 47 232 40 101 MFO7729640.1 hypothetical protein [Spirochaetia bacterium] diamond 186 80.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
32744769 32744769 PRJNA981359_S_NODE_58920_length_263_cov_1.905263_g58820_i0 PRJNA981359 58920 263 1.905263 5.01084169 Spirochaetia bacterium 2053615 Bacteria Bacteria 63.2 1.25e-10   NR MFO7729640.1 2053615 g58820 i0 53.7 0.615969581749049 54 25 61.6 0 100 261 45 98 MFO7729640.1 hypothetical protein [Spirochaetia bacterium] diamond 162 63.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;