RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA981359", tax_phylum = "Nematoda" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Eukaryota · 6 ✖

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA981359 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1270850 1270850 PRJNA981359_S_NODE_15421_length_382_cov_2.313916_g15321_i0 PRJNA981359 15421 382 2.313916 8.83915912 Steinernema 34507 Nematoda Nematoda 54.7 0.01   NTclustered gi|62946642|gb|AY944024.1| 52067 g15321 i0 100 0.37696335078534 29 0 8 0 189 217 91 63 Steinernema riobrave isolate N29 12S ribosomal RNA gene, partial sequence; mitochondrial blastn 144 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema riobrave
3512620 3512620 PRJNA981359_S_NODE_23543_length_347_cov_2.945255_g23443_i0 PRJNA981359 23543 347 2.945255 10.22003485 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.033   NTclustered gi|690018537|emb|LM525775.1| 174720 g23443 i0 100 0.0806916426512968 28 0 8 0 48 75 37426 37453 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000162 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
7341033 7341033 PRJNA981359_S_NODE_65926_length_251_cov_1.314607_g65826_i0 PRJNA981359 65926 251 1.314607 3.29966357 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.023   NTclustered gi|1557394408|emb|LR031564.1| 45931 g65826 i0 100 0.111553784860558 28 0 11 0 224 251 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
12442583 12442583 PRJNA981359_S_NODE_7350_length_451_cov_20.767196_g7251_i0 PRJNA981359 7350 451 20.767196 93.66005396 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.044   NTclustered gi|1557394408|emb|LR031564.1| 45931 g7251 i0 100 0.0620842572062084 28 0 6 0 424 451 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
18814637 18814637 PRJNA981359_S_NODE_5155_length_494_cov_3.923990_g5056_i0 PRJNA981359 5155 494 3.92399 19.3845106 Strongyloides papillosus 174720 Nematoda Nematoda 60.2 2.88e-4   NTclustered gi|687022657|emb|LM525571.1| 174720 g5056 i0 94.737 0.0769230769230769 38 2 8 0 5 42 20620 20583 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000012 blastn 38 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
30790600 30790600 PRJNA981359_S_NODE_43734_length_294_cov_1.579186_g43634_i0 PRJNA981359 43734 294 1.579186 4.64280684 Metazoa 33208 Nematoda Nematoda 65.1 9.83e-10   NR KAE9418444.1 6313 g43634 i0 76.9 354.163265306122 39 9 39.8 0 134 250 1285 1323 KAE9418444.1 hypothetical protein Angca_006067, partial [Angiostrongylus cantonensis] diamond 104124 65.5 0.993893129770992 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Angiostrongylus Angiostrongylus cantonensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;