RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA981359" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJNA981359 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13716143 13716143 PRJNA981359_S_NODE_38591_length_305_cov_4.469828_g38491_i0 PRJNA981359 38591 305 4.469828 13.6329754 uncultured Poseidoniia archaeon 1697135 Archaea Archaea 52.8 0.028   NTclustered gi|730903793|gb|KP211874.1| 1697135 g38491 i0 100 0.0918032786885246 28 0 9 0 98 125 17103 17130 Uncultured Candidatus Thalassoarchaea euryarchaeote clone MedDCM-OCT2007-C2085 genomic sequence blastn 28 52.8 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia       uncultured Poseidoniia archaeon
31226838 31226838 PRJNA981359_S_NODE_46835_length_287_cov_2.532710_g46735_i0 PRJNA981359 46835 287 2.53271 7.2688777 Thermoplasmatota archaeon 2806419 Archaea Archaea 43.1 0.00952   NR MDH7507601.1 2806419 g46735 i0 34.5 0.574912891986063 55 29 51.2 2 15 161 42 95 MDH7507601.1 aldehyde:ferredoxin oxidoreductase [Thermoplasmatota archaeon] diamond 165 43.1 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;