RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA981359" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA981359 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6066174 6066174 PRJNA981359_S_NODE_53065_length_274_cov_3.104478_g52965_i0 PRJNA981359 53065 274 3.104478 8.50626972 Leptotrichia hongkongensis 554406 Bacteria Bacteria 494 3.48e-135   NTclustered gi|1708587163|dbj|AP019846.1| 554406 g52965 i0 99.27 8.01459854014599 274 1 100 1 1 274 677061 677333 Leptotrichia hongkongensis JMUB5056 DNA, complete genome blastn 2196 494 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hongkongensis
20089240 20089240 PRJNA981359_S_NODE_47676_length_285_cov_3.693396_g47576_i0 PRJNA981359 47676 285 3.693396 10.5261786 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 494 3.64e-135   NTclustered gi|922689899|gb|CP012410.1| 712357 g47576 i0 97.895 35.8666666666667 285 6 100 0 1 285 52086 51802 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 10222 494 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
21673159 21673159 PRJNA981359_S_NODE_60097_length_261_cov_1.505319_g59997_i0 PRJNA981359 60097 261 1.505319 3.92888259 root 1 Root_unresolved Root_unresolved 483 7.12e-132   NTclustered gi|285798177|gb|GU408159.1| 860 g59997 i0 100 128 261 0 100 0 1 261 49 309 Fusobacterium periodonticum clone DP015 16S ribosomal RNA gene, partial sequence blastn 33408 483 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;