RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA981359", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA981359 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4790486 4790486 PRJNA981359_S_NODE_37804_length_307_cov_3.461538_g37704_i0 PRJNA981359 37804 307 3.461538 10.62692166 Plasmodium sp. gorilla clade G2 880535 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.008   NTclustered gi|1620175562|ref|XM_028683273.1| 880535 g37704 i0 100 0.0944625407166124 29 0 9 0 146 174 1691 1663 Plasmodium sp. gorilla clade G2 vacuolar transporter chaperone,putative (PADL01_1230800), partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium sp. gorilla clade G2
17539997 17539997 PRJNA981359_S_NODE_2614_length_600_cov_3.062619_g2517_i0 PRJNA981359 2614 600 3.062619 18.375714 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.005   NTclustered gi|1620139151|ref|XM_028675269.1| 85471 g2517 i0 96.97 0.055 33 1 6 0 266 298 1543 1575 Plasmodium relictum clp1-related protein, putative (PRELSG_0502300), partial mRNA blastn 33 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
17540693 17540693 PRJNA981359_S_NODE_49874_length_281_cov_1.500000_g49774_i0 PRJNA981359 49874 281 1.5 4.215 Plasmodium berghei 5821 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.026   NTclustered gi|1843423069|dbj|LC541880.1| 5823 g49774 i0 100 0.099644128113879 28 0 10 0 109 136 8087 8060 Plasmodium berghei ANKA chromosome 1 telomere region, partial sequence blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;