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contig_metadata

5 rows where bioproject = "PRJNA981359" and tax_clade = "Human endogenous retroviruses"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Human endogenous retroviruses · 5 ✖

bioproject 1

  • PRJNA981359 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22640150 22640150 PRJNA981359_S_NODE_60618_length_260_cov_1.374332_g60518_i0 PRJNA981359 60618 260 1.374332 3.5732632 Human endogenous retrovirus K 45617 Viruses Viruses 54.3 3.91e-6   NR CAA76882.1 45617 g60518 i0 61.4 5.58461538461538 44 17 50.8 0 128 259 571 614 CAA76882.1 pol protein [Human endogenous retrovirus K] diamond 1452 54.3 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus K
27279253 27279253 PRJNA981359_S_NODE_46163_length_289_cov_0.842593_g46063_i0 PRJNA981359 46163 289 0.842593 2.43509377 Human endogenous retrovirus K 45617 Viruses Viruses 88.6 2.64e-19   NR ABA28250.1 45617 g46063 i0 52.9 5.26297577854671 85 40 88.2 0 257 3 101 185 ABA28250.1 protease, partial [Human endogenous retrovirus K] diamond 1521 88.6 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus K
28037155 28037155 PRJNA981359_S_NODE_20425_length_359_cov_0.727273_g20325_i0 PRJNA981359 20425 359 0.727273 2.61091007 HERV-H/env6 57282 Viruses Viruses 78.6 3.8e-14   NR CAB94193.2 129526 g20325 i0 43.7 0.994428969359331 119 67 99.4 0 357 1 366 484 CAB94193.2 envelope protein [HERV-H/env60] diamond 357 78.6 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus H
29300022 29300022 PRJNA981359_S_NODE_70229_length_246_cov_0.867052_g70129_i0 PRJNA981359 70229 246 0.867052 2.13294792 Human endogenous retrovirus K 45617 Viruses Viruses 75.5 1.01e-13   NR CAA71418.1 45617 g70129 i0 66.7 7.68292682926829 63 21 76.8 0 206 18 224 286 CAA71418.1 gag protein, partial [Human endogenous retrovirus K] diamond 1890 75.5 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus K
30057779 30057779 PRJNA981359_S_NODE_58631_length_264_cov_0.816754_g58531_i0 PRJNA981359 58631 264 0.816754 2.15623056 Human endogenous retrovirus HCML-ARV 228277 Viruses Viruses 90.5 7.99e-19   NR AAP06677.1 228277 g58531 i0 59.7 2.61363636363636 77 31 87.5 0 264 34 25 101 AAP06677.1 pol protein [Human endogenous retrovirus HCML-ARV] diamond 690 91.3 0.991237677984666 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;