RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA981359" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA981359 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28005695 28005695 PRJNA981359_S_NODE_55825_length_269_cov_1.591837_g55725_i0 PRJNA981359 55825 269 1.591837 4.28204153 Minisyncoccota bacterium 2053589 Bacteria Bacteria 43.9 0.0172   NR HZX00890.1 2053589 g55725 i0 35.1 0.858736059479554 77 45 85.9 1 38 268 161 232 HZX00890.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 231 43.9 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29363240 29363240 PRJNA981359_S_NODE_73589_length_241_cov_4.000000_g73489_i0 PRJNA981359 73589 241 4 9.64 Parcubacteria group bacterium 2026774 Bacteria Bacteria 45.1 0.00514   NR MDB4992349.1 2026774 g73489 i0 32.9 0.908713692946058 73 46 90.9 2 241 23 54 123 MDB4992349.1 hypothetical protein [Parcubacteria group bacterium] diamond 219 45.1 1 Bacteria Bacteria candidate phyla             Parcubacteria group bacterium
31732908 31732908 PRJNA981359_S_NODE_55637_length_269_cov_2.734694_g55537_i0 PRJNA981359 55637 269 2.734694 7.35632686 Patescibacteria group bacterium 2052139 Bacteria Bacteria 43.5 0.025   NR MBU1967386.1 2052139 g55537 i0 37 0.602230483271376 54 28 59.1 2 108 266 143 191 MBU1967386.1 prolipoprotein diacylglyceryl transferase [Patescibacteria group bacterium] diamond 162 43.5 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;