RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA980839" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA980839 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27910435 27910435 PRJNA980839_P_NODE_171245_length_269_cov_1.918367_g167461_i0 PRJNA980839 171245 269 1.918367 5.16040723 Amphimedon queenslandica 400682 Porifera other_Eukaryota 61.2 1.47e-8   NR XP_003387157.1 400682 g167461 i0 42.9 0.702602230483271 63 36 70.3 0 15 203 178 240 XP_003387157.1 PREDICTED: uncharacterized protein LOC100632453 [Amphimedon queenslandica] diamond 189 61.2 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon queenslandica
31606482 31606482 PRJNA980839_P_NODE_221296_length_245_cov_0.895349_g217512_i0 PRJNA980839 221296 245 0.895349 2.19360505 Amphimedon queenslandica 400682 Porifera other_Eukaryota 60.8 1.6e-8   NR XP_019856705.1 400682 g217512 i0 48.6 0.906122448979592 74 37 89.4 1 4 222 237 310 XP_019856705.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100634909 [Amphimedon queenslandica] diamond 222 60.8 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon queenslandica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;