RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA980839" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA980839 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12437372 12437372 PRJNA980839_P_NODE_188810_length_256_cov_2.349727_g185026_i0 PRJNA980839 188810 256 2.349727 6.01530112 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 472 1.51e-128   NTclustered gi|325194423|emb|FR825253.1| 890382 g185026 i0 100 99.61328125 255 0 99 0 2 256 901 647 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 25501 472 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
29426061 29426061 PRJNA980839_P_NODE_227349_length_244_cov_0.894737_g223565_i0 PRJNA980839 227349 244 0.894737 2.18315828 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0212   NR OQR81176.1 1202772 g223565 i0 37.8 0.55327868852459 45 28 55.3 0 104 238 1714 1758 OQR81176.1 hypothetical protein ACHHYP_16695 [Achlya hypogyna] diamond 135 43.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
32781918 32781918 PRJNA980839_P_NODE_231760_length_242_cov_2.414201_g227976_i0 PRJNA980839 231760 242 2.414201 5.84236642 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 71.6 2.41e-12   NR XP_067788400.1 4785 g227976 i0 49.3 7.17768595041322 73 37 90.5 0 23 241 492 564 XP_067788400.1 TKL protein kinase [Phytophthora cinnamomi] diamond 1737 71.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;