RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA980839" and tax_phylum = "Armatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA980839 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
959076 959076 PRJNA980839_P_NODE_233381_length_242_cov_0.911243_g229597_i0 PRJNA980839 233381 242 0.911243 2.20520806 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 239 1.56e-58   NTclustered gi|2076449834|gb|CP075365.1| 2682144 g229597 i0 85.526 93.0826446280992 228 33 94 0 15 242 2261308 2261081 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM2 chromosome blastn 22526 239 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
27916614 27916614 PRJNA980839_P_NODE_195165_length_252_cov_1.715084_g191381_i0 PRJNA980839 195165 252 1.715084 4.32201168 Bacteria 2 Bacteria Bacteria 90.5 6.32e-19   NR MCW3061467.1 2494211 g191381 i0 55.4 2.96428571428571 83 37 98.8 0 2 250 476 558 MCW3061467.1 hypothetical protein [Capsulimonas sp.] diamond 747 90.9 0.995599559955996 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas sp.
28573658 28573658 PRJNA980839_P_NODE_150107_length_287_cov_1.364486_g146323_i0 PRJNA980839 150107 287 1.364486 3.91607482 Armatimonadota bacterium 2033014 Bacteria Bacteria 150 3.66e-41   NR MES2459932.1 2033014 g146323 i0 79.8 0.982578397212544 94 19 98.3 0 1 282 53 146 MES2459932.1 PLP-dependent aminotransferase family protein [Armatimonadota bacterium] diamond 282 150 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28927115 28927115 PRJNA980839_P_NODE_239068_length_241_cov_0.916667_g235284_i0 PRJNA980839 239068 241 0.916667 2.20916747 Bacillati 1783272 Bacteria Bacteria 110 1.32e-29   NR PJB73086.1 1973913 g235284 i0 72.6 1.8298755186722 73 20 90.9 0 2 220 15 87 PJB73086.1 MAG: hypothetical protein CO095_06275 [Armatimonadetes bacterium CG_4_9_14_3_um_filter_58_7] diamond 441 110 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium CG_4_9_14_3_um_filter_58_7
28952912 28952912 PRJNA980839_P_NODE_217428_length_246_cov_0.890173_g213644_i0 PRJNA980839 217428 246 0.890173 2.18982558 Armatimonadota bacterium 2033014 Bacteria Bacteria 85.5 1.45e-17   NR MCX6360445.1 2033014 g213644 i0 56.6 0.926829268292683 76 32 91.5 1 240 16 1 76 MCX6360445.1 zinc-binding alcohol dehydrogenase [Armatimonadota bacterium] diamond 228 85.5 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
31194925 31194925 PRJNA980839_P_NODE_75935_length_438_cov_1.463014_g72151_i0 PRJNA980839 75935 438 1.463014 6.40800132 Armatimonadota bacterium 2033014 Bacteria Bacteria 73.2 5.31e-12   NR MBV9848408.1 2033014 g72151 i0 39.6 1.5 106 59 70.5 2 125 433 144 247 MBV9848408.1 HAF repeat-containing protein [Armatimonadota bacterium] diamond 657 73.2 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;