RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA980839" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA980839 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17535650 17535650 PRJNA980839_P_NODE_165954_length_273_cov_3.025000_g162170_i0 PRJNA980839 165954 273 3.025 8.25825 Eimeriidae 5799 SAR_Eukaryotes SAR_Eukaryotes 115 5.3e-31   NR XP_013230381.1 5802 g162170 i0 66.3 3.76923076923077 86 29 94.5 0 7 264 1 86 XP_013230381.1 60S Ribosomal protein L36, putative [Eimeria tenella] diamond 1029 115 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
23912444 23912444 PRJNA980839_P_NODE_55159_length_559_cov_1.742798_g51401_i0 PRJNA980839 55159 559 1.742798 9.74224082 Eimeria stiedai 471275 SAR_Eukaryotes SAR_Eukaryotes 553 1.2399999999999996e-152   NTclustered gi|511997|emb|Z33907.1| 471275 g51401 i0 98.718 5.98747763864043 312 2 56 2 1 311 311 1 E.stiedae (U82/129) DNA sequence (1173bp) blastn 3347 553 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria stiedai
31043704 31043704 PRJNA980839_P_NODE_153395_length_284_cov_1.459716_g149611_i0 PRJNA980839 153395 284 1.459716 4.14559344 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 62.4 8.73e-10   NR XP_003882759.1 572307 g149611 i0 59.6 1.20422535211268 57 23 60.2 0 284 114 90 146 XP_003882759.1 hypothetical protein NCLIV_025160 [Neospora caninum Liverpool] diamond 342 62.8 0.993630573248408 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;