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contig_metadata

32 rows where bioproject = "PRJNA980839", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 32 ✖

tax_kingdom 1

  • Pseudomonadati · 32 ✖

bioproject 1

  • PRJNA980839 · 32 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2233153 2233153 PRJNA980839_P_NODE_168722_length_271_cov_1.994949_g164938_i0 PRJNA980839 168722 271 1.994949 5.40631179 Thermodesulfovibrionales bacterium 2814272 Bacteria Bacteria 339 1.7e-88   NTclustered gi|2874253970|emb|OY970295.1| 2814272 g164938 i0 90.038 103.476014760148 261 26 97 0 8 268 2904762 2905022 MAG: Thermodesulfovibrionales bacterium isolate MFD01299.bin.c.3 genome assembly, chromosome: 1 blastn 28042 339 1 Bacteria   Pseudomonadati Nitrospirota Thermodesulfovibrionia Thermodesulfovibrionales     Thermodesulfovibrionales bacterium
6060736 6060736 PRJNA980839_P_NODE_150245_length_287_cov_1.186916_g146461_i0 PRJNA980839 150245 287 1.186916 3.40644892 Candidatus Manganitrophus sp. 2927580 Bacteria Bacteria 525 1.2999999999999995e-144   NTclustered gi|2449737786|gb|CP114557.1| 2927580 g146461 i0 99.652 4 287 1 100 0 1 287 21302 21588 MAG: Candidatus Manganitrophus sp. isolate GAC2 plasmid unnamed2, complete sequence blastn 1148 525 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae Candidatus Manganitrophus Candidatus Manganitrophus sp.
6062210 6062210 PRJNA980839_P_NODE_224245_length_244_cov_1.631579_g220461_i0 PRJNA980839 224245 244 1.631579 3.98105276 Nitrospira defluvii 330214 Bacteria Bacteria 394 3.17e-105   NTclustered gi|300603458|emb|FP929003.1| 330214 g220461 i0 95.885 83.1147540983606 243 10 99 0 1 243 76040 76282 Candidatus Nitrospira defluvii chromosome, complete genome blastn 20280 394 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira defluvii
8610351 8610351 PRJNA980839_P_NODE_151367_length_286_cov_1.201878_g147583_i0 PRJNA980839 151367 286 1.201878 3.43737108 Nitrospira cf. moscoviensis SBR1 96242 Bacteria Bacteria 185 1.0499999999999995e-55   NR WP_087473633.1 96242 g147583 i0 98.9 0.996503496503496 95 1 99.7 0 285 1 248 342 WP_087473633.1 phosphoribosylformylglycinamidine cyclo-ligase [Nitrospira cf. moscoviensis SBR1015] diamond 285 185 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira cf. moscoviensis SBR1015
17535238 17535238 PRJNA980839_P_NODE_144614_length_292_cov_1.557078_g140830_i0 PRJNA980839 144614 292 1.557078 4.54666776 Nitrospira sp. 70125 Bacteria Bacteria 161 1.2099999999999996e-43   NR MBS0156140.1 70125 g140830 i0 75 0.986301369863014 96 24 98.6 0 290 3 3228 3323 MBS0156140.1 hypothetical protein [Nitrospira sp.] diamond 288 161 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
22634431 22634431 PRJNA980839_P_NODE_144438_length_292_cov_1.917808_g140654_i0 PRJNA980839 144438 292 1.917808 5.59999936 Pseudomonadati 3379134 Bacteria Bacteria 159 2.24e-45   NR MBH0188299.1 70125 g140654 i0 98.7 1.58219178082192 77 1 79.1 0 61 291 248 324 MBH0188299.1 TRAP transporter small permease subunit [Nitrospira sp.] diamond 462 159 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
23911578 23911578 PRJNA980839_P_NODE_230139_length_243_cov_0.905882_g226355_i0 PRJNA980839 230139 243 0.905882 2.20129326 Candidatus Manganitrophaceae bacterium 2932367 Bacteria Bacteria 388 1.47e-103   NTclustered gi|2874254047|emb|OY970371.1| 2932367 g226355 i0 95.492 1.00411522633745 244 9 100 2 1 243 613953 613711 MAG: Candidatus Manganitrophaceae bacterium isolate MFD03066.bin.c.2 genome assembly, chromosome: 1 blastn 244 388 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae   Candidatus Manganitrophaceae bacterium
26740951 26740951 PRJNA980839_P_NODE_175721_length_266_cov_1.290155_g171937_i0 PRJNA980839 175721 266 1.290155 3.4318123 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 127 4.52e-36   NR MBX9657758.1 2026770 g171937 i0 100 0.676691729323308 60 0 67.7 0 2 181 24 83 MBX9657758.1 hypothetical protein [Nitrospiraceae bacterium] diamond 180 127 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
26804655 26804655 PRJNA980839_P_NODE_42301_length_698_cov_3.438400_g38651_i0 PRJNA980839 42301 698 3.4384 24.000032 Nitrospirota bacterium 2026887 Bacteria Bacteria 189 2.96e-52   NR MBF0565824.1 2026887 g38651 i0 45.6 0.932664756446991 217 115 93.3 1 2 652 253 466 MBF0565824.1 hypothetical protein [Nitrospirota bacterium] diamond 651 189 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
26994355 26994355 PRJNA980839_P_NODE_207182_length_249_cov_0.875000_g203398_i0 PRJNA980839 207182 249 0.875 2.17875 Nitrospira sp. 70125 Bacteria Bacteria 161 1.59e-47   NR MBH0204746.1 70125 g203398 i0 96.3 3.93975903614458 82 3 98.8 0 248 3 87 168 MBH0204746.1 7-cyano-7-deazaguanine synthase QueC [Nitrospira sp.] diamond 981 161 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
27247507 27247507 PRJNA980839_P_NODE_228303_length_243_cov_1.682353_g224519_i0 PRJNA980839 228303 243 1.682353 4.08811779 Nitrospira lenta 1436998 Bacteria Bacteria 157 1.63e-44   NR WP_181416967.1 1436998 g224519 i0 100 2.96296296296296 80 0 98.8 0 3 242 300 379 WP_181416967.1 HD domain-containing phosphohydrolase [Nitrospira lenta] diamond 720 157 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira lenta
27696089 27696089 PRJNA980839_P_NODE_54844_length_561_cov_3.467213_g51087_i0 PRJNA980839 54844 561 3.467213 19.45106493 Pseudomonadati 3379134 Bacteria Bacteria 290 2.7799999999999992e-87   NR TKB87886.1 70125 g51087 i0 73.7 2.98395721925134 186 49 99.5 0 559 2 940 1125 TKB87886.1 MAG: hypothetical protein E8D43_00670, partial [Nitrospira sp.] diamond 1674 290 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
28257838 28257838 PRJNA980839_P_NODE_138126_length_299_cov_2.969027_g134342_i0 PRJNA980839 138126 299 2.969027 8.87739073 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 73.2 3.06e-14   NR NLI29660.1 2026770 g134342 i0 45.7 0.923076923076923 92 50 92.3 0 299 24 22 113 NLI29660.1 integrase [Nitrospiraceae bacterium] diamond 276 73.2 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
28384290 28384290 PRJNA980839_P_NODE_239586_length_241_cov_0.916667_g235802_i0 PRJNA980839 239586 241 0.916667 2.20916747 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 45.8 0.00269   NR HWI67581.1 2026770 g235802 i0 42.3 0.647302904564315 52 30 64.7 0 233 78 128 179 HWI67581.1 hypothetical protein [Nitrospiraceae bacterium] diamond 156 45.8 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
28605304 28605304 PRJNA980839_P_NODE_107607_length_346_cov_1.978022_g103823_i0 PRJNA980839 107607 346 1.978022 6.84395612 Candidatus Manganitrophaceae bacterium 2932367 Bacteria Bacteria 115 1.32e-29   NR TAK00757.1 2932367 g103823 i0 61.3 1.95086705202312 111 42 95.4 1 1 330 88 198 TAK00757.1 MAG: DUF998 domain-containing protein, partial [Candidatus Manganitrophaceae bacterium] diamond 675 115 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae   Candidatus Manganitrophaceae bacterium
28611437 28611437 PRJNA980839_P_NODE_210607_length_248_cov_0.880000_g206823_i0 PRJNA980839 210607 248 0.88 2.1824 Pseudomonadati 3379134 Bacteria Bacteria 148 2.58e-40   NR MEO6307687.1 2026770 g206823 i0 90.1 10.7782258064516 81 8 98 0 4 246 246 326 MEO6307687.1 glycogen synthase GlgA [Nitrospiraceae bacterium] diamond 2673 148 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
28731704 28731704 PRJNA980839_P_NODE_28427_length_986_cov_2.294633_g25308_i0 PRJNA980839 28427 986 2.294633 22.62508138 Nitrospirae bacterium CG2_3 2026887 Bacteria Bacteria 151 1.06e-40   NR OIP63251.1 1805278 g25308 i0 52.9 0.477687626774848 157 73 47.8 1 986 516 37 192 OIP63251.1 MAG: hypothetical protein AUK29_06885 [Nitrospirae bacterium CG2_30_53_67] diamond 471 151 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirae bacterium CG2_30_53_67
28763077 28763077 PRJNA980839_P_NODE_165707_length_274_cov_1.149254_g161923_i0 PRJNA980839 165707 274 1.149254 3.14895596 Nitrospirota bacterium 2026887 Bacteria Bacteria 46.2 6.5e-4   NR MCL4491929.1 2026887 g161923 i0 32.3 2.11313868613139 96 51 89.8 3 269 24 2 97 MCL4491929.1 hypothetical protein [Nitrospirota bacterium] diamond 579 46.2 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
28794611 28794611 PRJNA980839_P_NODE_58567_length_533_cov_1.315217_g54798_i0 PRJNA980839 58567 533 1.315217 7.01010661 Nitrospira sp. 70125 Bacteria Bacteria 202 2.11e-63   NR HEU5407422.1 70125 g54798 i0 78.2 1.39587242026266 124 27 69.8 0 157 528 1 124 HEU5407422.1 hypothetical protein [Nitrospira sp.] diamond 744 202 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
28857844 28857844 PRJNA980839_P_NODE_234748_length_242_cov_0.911243_g230964_i0 PRJNA980839 234748 242 0.911243 2.20520806 Nitrospira sp. 70125 Bacteria Bacteria 141 6.049999999999999e-37   NR MDF2755505.1 70125 g230964 i0 86.3 3.96694214876033 80 11 99.2 0 2 241 410 489 MDF2755505.1 hypothetical protein [Nitrospira sp.] diamond 960 141 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
28920899 28920899 PRJNA980839_P_NODE_160328_length_278_cov_1.502439_g156544_i0 PRJNA980839 160328 278 1.502439 4.17678042 Nitrospirales bacterium 2358460 Bacteria Bacteria 52.8 1.66e-5   NR MEE8241163.1 2358460 g156544 i0 56.1 0.852517985611511 41 18 44.2 0 127 5 21 61 MEE8241163.1 group II intron reverse transcriptase/maturase [Nitrospirales bacterium] diamond 237 52.8 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales     Nitrospirales bacterium
28920957 28920957 PRJNA980839_P_NODE_74388_length_445_cov_1.150538_g70604_i0 PRJNA980839 74388 445 1.150538 5.1198941 Nitrospira sp. 70125 Bacteria Bacteria 161 9.999999999999999e-43   NR MBS0156140.1 70125 g70604 i0 56.8 1.98876404494382 148 58 99.8 2 2 445 852 993 MBS0156140.1 hypothetical protein [Nitrospira sp.] diamond 885 161 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
29205407 29205407 PRJNA980839_P_NODE_14289_length_1657_cov_3.267677_g12327_i0 PRJNA980839 14289 1657 3.267677 54.14540789 Nitrospirota bacterium 2026887 Bacteria Bacteria 157 1.47e-39   NR MBI5641173.1 2026887 g12327 i0 43.3 0.363910681955341 201 90 36.2 4 600 1 10 187 MBI5641173.1 hypothetical protein [Nitrospirota bacterium] diamond 603 157 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
29242918 29242918 PRJNA980839_P_NODE_144409_length_292_cov_1.990868_g140625_i0 PRJNA980839 144409 292 1.990868 5.81333456 Pseudomonadati 3379134 Bacteria Bacteria 174 1.09e-49   NR MDH5741604.1 70125 g140625 i0 84.5 5.97945205479452 97 15 99.7 0 292 2 244 340 MDH5741604.1 hypothetical protein [Nitrospira sp.] diamond 1746 174 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
29646878 29646878 PRJNA980839_P_NODE_195530_length_252_cov_1.329609_g191746_i0 PRJNA980839 195530 252 1.329609 3.35061468 Nitrospirota bacterium 2026887 Bacteria Bacteria 98.6 1.03e-23   NR MEK7725719.1 2026887 g191746 i0 90.7 1.91666666666667 54 5 64.3 0 250 89 129 182 MEK7725719.1 YggS family pyridoxal phosphate-dependent enzyme [Nitrospirota bacterium] diamond 483 98.6 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
29678476 29678476 PRJNA980839_P_NODE_101210_length_359_cov_3.486014_g97426_i0 PRJNA980839 101210 359 3.486014 12.51479026 Nitrospirota bacterium 2026887 Bacteria Bacteria 91.7 1e-18   NR MBF0565824.1 2026887 g97426 i0 42.7 0.919220055710306 110 63 91.9 0 19 348 154 263 MBF0565824.1 hypothetical protein [Nitrospirota bacterium] diamond 330 91.7 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
30063812 30063812 PRJNA980839_P_NODE_223971_length_244_cov_1.801170_g220187_i0 PRJNA980839 223971 244 1.80117 4.3948548 Pseudomonadati 3379134 Bacteria Bacteria 139 3.82e-36   NR MCA9473590.1 70125 g220187 i0 77.5 9.9344262295082 80 18 98.4 0 243 4 671 750 MCA9473590.1 S8 family serine peptidase [Nitrospira sp.] diamond 2424 139 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
30468835 30468835 PRJNA980839_P_NODE_174493_length_267_cov_1.247423_g170709_i0 PRJNA980839 174493 267 1.247423 3.33061941 Nitrospira cf. moscoviensis SBR1 96242 Bacteria Bacteria 174 5.15e-49   NR WP_140393915.1 96242 g170709 i0 97.7 0.98876404494382 88 2 98.9 0 265 2 73 160 WP_140393915.1 caspase family protein [Nitrospira cf. moscoviensis SBR1015] diamond 264 174 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira cf. moscoviensis SBR1015
30689631 30689631 PRJNA980839_P_NODE_160453_length_278_cov_1.502439_g156669_i0 PRJNA980839 160453 278 1.502439 4.17678042 Nitrospira sp. 70125 Bacteria Bacteria 169 2.74e-51   NR MBS0150191.1 70125 g156669 i0 88 0.992805755395683 92 11 99.3 0 277 2 73 164 MBS0150191.1 hypothetical protein [Nitrospira sp.] diamond 276 169 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
31069153 31069153 PRJNA980839_P_NODE_69155_length_469_cov_2.429293_g65373_i0 PRJNA980839 69155 469 2.429293 11.39338417 Nitrospira sp. 70125 Bacteria Bacteria 76.6 4.59e-13   NR WHZ16006.1 70125 g65373 i0 47.8 0.428571428571429 67 34 42.2 1 199 2 4 70 WHZ16006.1 MAG: hypothetical protein OJF52_002854 [Nitrospira sp.] diamond 201 76.6 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
31859406 31859406 PRJNA980839_P_NODE_65237_length_490_cov_2.364508_g61455_i0 PRJNA980839 65237 490 2.364508 11.5860892 Nitrospirota bacterium 2026887 Bacteria Bacteria 82.4 1.24e-15   NR MCK9418605.1 2026887 g61455 i0 60.6 0.43469387755102 71 27 43.5 1 3 215 50 119 MCK9418605.1 class I SAM-dependent methyltransferase [Nitrospirota bacterium] diamond 213 82.4 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
32144253 32144253 PRJNA980839_P_NODE_100718_length_361_cov_0.927083_g96934_i0 PRJNA980839 100718 361 0.927083 3.34676963 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 143 1.7799999999999998e-37   NR HLA61582.1 2026770 g96934 i0 55.8 1.99445983379501 120 53 99.7 0 1 360 304 423 HLA61582.1 hybrid sensor histidine kinase/response regulator [Nitrospiraceae bacterium] diamond 720 143 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;