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contig_metadata

17 rows where bioproject = "PRJNA980839", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 17 ✖

tax_kingdom 1

  • Pseudomonadati · 17 ✖

bioproject 1

  • PRJNA980839 · 17 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6062228 6062228 PRJNA980839_P_NODE_225325_length_244_cov_0.900585_g221541_i0 PRJNA980839 225325 244 0.900585 2.1974274 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 134 1.75e-34   NR HEY8279362.1 3034175 g221541 i0 79 2.98770491803279 81 17 99.6 0 243 1 307 387 HEY8279362.1 vitamin B12-dependent ribonucleotide reductase [Bdellovibrionota bacterium] diamond 729 134 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
11474110 11474110 PRJNA980839_P_NODE_247669_length_203_cov_4.238462_g243885_i0 PRJNA980839 247669 203 4.238462 8.60407786 Halobacteriovorax 1652133 Bacteria Bacteria 58.4 3.8e-4   NTclustered gi|1249980216|gb|CP017414.1| 97084 g243885 i0 97.059 0.660098522167488 34 1 17 0 134 167 52430 52463 Halobacteriovorax marinus strain BE01 chromosome, complete genome blastn 134 58.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax marinus
20085649 20085649 PRJNA980839_P_NODE_237976_length_241_cov_0.916667_g234192_i0 PRJNA980839 237976 241 0.916667 2.20916747 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 147 1.07e-39   NR MBX3020797.1 2053517 g234192 i0 97.5 2.98755186721992 80 2 99.6 0 241 2 471 550 MBX3020797.1 ABC transporter ATP-binding protein [Bdellovibrionales bacterium] diamond 720 147 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27221722 27221722 PRJNA980839_P_NODE_177042_length_265_cov_1.333333_g173258_i0 PRJNA980839 177042 265 1.333333 3.53333245 Bacteria 2 Bacteria Bacteria 74.7 9.56e-14   NR HVK60776.1 2053517 g173258 i0 46.5 1.94716981132075 86 46 97.4 0 263 6 60 145 HVK60776.1 hypothetical protein [Bdellovibrionales bacterium] diamond 516 74.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27632670 27632670 PRJNA980839_P_NODE_237844_length_241_cov_0.916667_g234060_i0 PRJNA980839 237844 241 0.916667 2.20916747 Pseudomonadati 3379134 Bacteria Bacteria 92 1.55e-19   NR MBK9324498.1 2026715 g234060 i0 58.8 2.95020746887967 80 32 98.3 1 4 240 224 303 MBK9324498.1 type IV secretory system conjugative DNA transfer family protein [Pseudobdellovibrionaceae bacterium] diamond 711 92 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
27816207 27816207 PRJNA980839_P_NODE_225344_length_244_cov_0.900585_g221560_i0 PRJNA980839 225344 244 0.900585 2.1974274 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 93.6 8.92e-22   NR MDZ4084765.1 2053517 g221560 i0 51.7 1.06967213114754 87 33 95.9 1 236 3 62 148 MDZ4084765.1 hypothetical protein [Bdellovibrionales bacterium] diamond 261 93.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28005654 28005654 PRJNA980839_P_NODE_225345_length_244_cov_0.900585_g221561_i0 PRJNA980839 225345 244 0.900585 2.1974274 Oligoflexia bacterium 2599941 Bacteria Bacteria 100 1.21e-22   NR MCO5144355.1 2599941 g221561 i0 64.8 0.872950819672131 71 25 87.3 0 234 22 305 375 MCO5144355.1 diaminopimelate decarboxylase [Oligoflexia bacterium] diamond 213 100 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
28321120 28321120 PRJNA980839_P_NODE_221346_length_245_cov_0.895349_g217562_i0 PRJNA980839 221346 245 0.895349 2.19360505 Oligoflexus sp. 1971216 Bacteria Bacteria 102 1.1199999999999999e-23   NR WP_324950757.1 1971216 g217562 i0 58.8 0.979591836734694 80 33 98 0 244 5 227 306 WP_324950757.1 FIST N-terminal domain-containing protein [Oligoflexus sp.] diamond 240 102 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
29053562 29053562 PRJNA980839_P_NODE_235328_length_242_cov_0.911243_g231544_i0 PRJNA980839 235328 242 0.911243 2.20520806 Micavibrio 213485 Bacteria Bacteria 101 2.13e-23   NR MDE1153873.1 2024841 g231544 i0 64.1 6.76859504132231 78 28 96.7 0 8 241 241 318 MDE1153873.1 ATP-binding protein [Micavibrio sp.] diamond 1638 102 0.990196078431373 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
29931679 29931679 PRJNA980839_P_NODE_186571_length_258_cov_1.567568_g182787_i0 PRJNA980839 186571 258 1.567568 4.04432544 Oligoflexia bacterium 2599941 Bacteria Bacteria 74.3 2.75e-14   NR MBC7385590.1 2599941 g182787 i0 49.3 1.75581395348837 67 34 77.9 0 56 256 1 67 MBC7385590.1 hypothetical protein [Oligoflexia bacterium] diamond 453 74.3 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
30342780 30342780 PRJNA980839_P_NODE_79492_length_423_cov_2.382857_g75708_i0 PRJNA980839 79492 423 2.382857 10.07948511 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 61.2 2.79e-9   NR MCB0310233.1 2053517 g75708 i0 50.6 0.546099290780142 77 37 53.9 1 234 7 7 83 MCB0310233.1 hypothetical protein [Bdellovibrionales bacterium] diamond 231 61.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30443195 30443195 PRJNA980839_P_NODE_205653_length_249_cov_0.875000_g201869_i0 PRJNA980839 205653 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 143 1.56e-37   NR MCO5144381.1 2599941 g201869 i0 84.1 1.97590361445783 82 13 98.8 0 3 248 228 309 MCO5144381.1 serine protein kinase PrkA [Oligoflexia bacterium] diamond 492 144 0.993055555555556 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
30500230 30500230 PRJNA980839_P_NODE_206453_length_249_cov_0.875000_g202669_i0 PRJNA980839 206453 249 0.875 2.17875 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 96.7 6.6e-22   NR MCX7978398.1 2026715 g202669 i0 49.4 1.02409638554217 85 41 100 1 1 249 41 125 MCX7978398.1 DUF4007 family protein [Pseudobdellovibrionaceae bacterium] diamond 255 96.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30847783 30847783 PRJNA980839_P_NODE_234714_length_242_cov_0.911243_g230930_i0 PRJNA980839 234714 242 0.911243 2.20520806 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 139 1.81e-36   NR MBS1983691.1 2053517 g230930 i0 84.8 5.91322314049587 79 12 97.9 0 1 237 50 128 MBS1983691.1 type IV secretory system conjugative DNA transfer family protein [Bdellovibrionales bacterium] diamond 1431 139 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31543310 31543310 PRJNA980839_P_NODE_237856_length_241_cov_0.916667_g234072_i0 PRJNA980839 237856 241 0.916667 2.20916747 Oligoflexia bacterium 2599941 Bacteria Bacteria 94 1.32e-20   NR MCM2321642.1 2599941 g234072 i0 61.3 0.995850622406639 80 31 99.6 0 2 241 3 82 MCM2321642.1 pilus assembly protein PilM [Oligoflexia bacterium] diamond 240 94 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
32744716 32744716 PRJNA980839_P_NODE_205200_length_249_cov_0.875000_g201416_i0 PRJNA980839 205200 249 0.875 2.17875 Bacteriovorax sp. 2608087 Bacteria Bacteria 112 1.6700000000000002e-26   NR MBC7712141.1 2608087 g201416 i0 71.6 1.79518072289157 74 21 89.2 0 244 23 449 522 MBC7712141.1 DNA ligase D [Bacteriovorax sp.] diamond 447 112 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp.
32870512 32870512 PRJNA980839_P_NODE_227080_length_244_cov_0.900585_g223296_i0 PRJNA980839 227080 244 0.900585 2.1974274 Oligoflexus sp. 1971216 Bacteria Bacteria 125 1.89e-32   NR WP_325143727.1 1971216 g223296 i0 66.7 1.99180327868852 81 27 99.6 0 244 2 61 141 WP_325143727.1 glycosyltransferase family 1 protein [Oligoflexus sp.] diamond 486 125 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;