RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA980839", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA980839 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10199097 10199097 PRJNA980839_P_NODE_5328_length_2799_cov_43.873441_g357_i9 PRJNA980839 5328 2799 43.873441 1228.01761359 Gammaretrovirus 153135 Viruses Viruses 5153 0   NTclustered gi|82582295|gb|DQ241301.1| 356663 g357 i9 99.893 102.774562343694 2799 3 100 0 1 2799 8181 5383 Xenotropic MuLV-related virus VP35, complete genome blastn 287666 5164 0.997869868319132 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Murine leukemia-related retroviruses
15298312 15298312 PRJNA980839_P_NODE_4532_length_2989_cov_35.229081_g357_i6 PRJNA980839 4532 2989 35.229081 1052.99723109 Gammaretrovirus 153135 Viruses Viruses 4591 0   NTclustered gi|82582295|gb|DQ241301.1| 356663 g357 i6 98.95 101.206758113081 2571 19 93 4 1 2563 5383 7953 Xenotropic MuLV-related virus VP35, complete genome blastn 302507 4602 0.997609734897871 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Murine leukemia-related retroviruses
30057692 30057692 PRJNA980839_P_NODE_140411_length_297_cov_1.267857_g136627_i0 PRJNA980839 140411 297 1.267857 3.76553529 Baboon endogenous virus strain M7 11764 Viruses Viruses 196 7.069999999999998e-56   NR YP_009109689.1 11764 g136627 i0 93.9 5.92929292929293 98 6 99 0 296 3 1123 1220 YP_009109689.1 gag-pol precursor polyprotein [Baboon endogenous virus strain M7] diamond 1761 196 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Baboon endogenous virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;