RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA980839", tax_kingdom = "Fusobacteriati" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA980839 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6060946 6060946 PRJNA980839_P_NODE_161645_length_277_cov_1.509804_g157861_i0 PRJNA980839 161645 277 1.509804 4.18215708 Sneathia vaginalis 187101 Bacteria Bacteria 512 9.73e-141   NTclustered gi|2831218648|gb|CP170997.1| 187101 g157861 i0 100 4.18772563176895 277 0 100 0 1 277 821499 821223 Sneathia vaginalis strain WGS1539 chromosome, complete genome blastn 1160 512 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia vaginalis
8610418 8610418 PRJNA980839_P_NODE_154427_length_283_cov_1.466667_g150643_i0 PRJNA980839 154427 283 1.466667 4.15066761 Sneathia sanguinegens 40543 Bacteria Bacteria 523 4.5999999999999983e-144   NTclustered gi|2769805188|gb|CP160095.1| 40543 g150643 i0 100 1 283 0 100 0 1 283 1102901 1102619 Sneathia sanguinegens strain CCUG 41628T chromosome, complete genome blastn 283 523 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia sanguinegens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;