RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA980839" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA980839 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28832321 28832321 PRJNA980839_P_NODE_217248_length_246_cov_0.890173_g213464_i0 PRJNA980839 217248 246 0.890173 2.18982558 Bacteria 2 Bacteria Bacteria 42.4 0.0441   NR OGP69361.1 1797831 g213464 i0 39.7 1.47560975609756 63 36 74.4 1 23 205 143 205 OGP69361.1 MAG: hypothetical protein A2170_04995 [Deltaproteobacteria bacterium RBG_13_53_10] diamond 363 42.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_53_10
31163459 31163459 PRJNA980839_P_NODE_90695_length_386_cov_1.530351_g86911_i0 PRJNA980839 90695 386 1.530351 5.90715486 SAR324 cluster bacterium 2024889 Bacteria Bacteria 79.3 2.93e-14   NR MBF0239226.1 2024889 g86911 i0 33.1 1.01036269430052 130 81 96.4 1 377 6 178 307 MBF0239226.1 SWF/SNF helicase family protein [SAR324 cluster bacterium] diamond 390 79.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
32017677 32017677 PRJNA980839_P_NODE_163918_length_275_cov_1.524752_g160134_i0 PRJNA980839 163918 275 1.524752 4.193068 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-8 2013758 Bacteria Bacteria 108 1.8e-26   NR PKN07935.1 2013758 g160134 i0 62.2 3.03272727272727 90 34 98.2 0 1 270 117 206 PKN07935.1 MAG: hypothetical protein CVU73_11080 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-8] diamond 834 108 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-8

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;