RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA980839", tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts" and tax_phylum = "Pseudomonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 3 ✖

bioproject 1

  • PRJNA980839 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7335875 7335875 PRJNA980839_P_NODE_183126_length_260_cov_2.454545_g179342_i0 PRJNA980839 183126 260 2.454545 6.381817 Symbiopectobacterium purcellii 2871826 Bacteria Bacteria 392 1.2299999999999999e-104   NTclustered gi|2087438146|gb|CP081864.1| 2871826 g179342 i0 93.846 89.3923076923077 260 16 100 0 1 260 1304793 1304534 Symbiopectobacterium purcellii strain SyEd1 chromosome, complete genome blastn 23242 392 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Symbiopectobacterium Symbiopectobacterium purcellii
16261675 16261675 PRJNA980839_P_NODE_219213_length_246_cov_0.890173_g215429_i0 PRJNA980839 219213 246 0.890173 2.18982558 Symbiopectobacterium purcellii 2871826 Bacteria Bacteria 346 9.1e-91   NTclustered gi|2087438146|gb|CP081864.1| 2871826 g215429 i0 92.213 94.0325203252033 244 19 99 0 3 246 2139362 2139119 Symbiopectobacterium purcellii strain SyEd1 chromosome, complete genome blastn 23132 346 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Symbiopectobacterium Symbiopectobacterium purcellii
27721736 27721736 PRJNA980839_P_NODE_235544_length_242_cov_0.869822_g231760_i0 PRJNA980839 235544 242 0.869822 2.10496924 Candidatus Symbiopectobacterium sp. NZEC135 2820471 Bacteria Bacteria 76.6 1.16e-15   NR MCW2483525.1 2820471 g231760 i0 80.4 1.1404958677686 46 9 57 0 3 140 91 136 MCW2483525.1 pilus assembly protein HofM [Candidatus Symbiopectobacterium sp. NZEC135] diamond 276 76.6 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Symbiopectobacterium Candidatus Symbiopectobacterium sp. NZEC135

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;