RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA980839" and tax_clade = "Methanomada group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA980839 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1270115 1270115 PRJNA980839_P_NODE_177721_length_264_cov_2.104712_g173937_i0 PRJNA980839 177721 264 2.104712 5.55643968 Methanobacterium 2160 Archaea Archaea 261 3.68e-65   NTclustered gi|1297867845|gb|CP017766.1| 59277 g173937 i0 91.579 4.51893939393939 190 14 72 1 1 190 1458091 1458278 Methanobacterium subterraneum strain MO-MB1 chromosome, complete genome blastn 1193 261 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium subterraneum
31194898 31194898 PRJNA980839_P_NODE_225475_length_244_cov_0.900585_g221691_i0 PRJNA980839 225475 244 0.900585 2.1974274 Methanobacterium sp. 2164 Archaea Archaea 139 3.579999999999999e-38   NR TMS41773.1 2164 g221691 i0 94.9 0.959016393442623 78 4 95.9 0 3 236 257 334 TMS41773.1 MAG: CPBP family intramembrane metalloprotease [Methanobacterium sp.] diamond 234 139 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;