RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA980839", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA980839 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27374261 27374261 PRJNA980839_P_NODE_199183_length_251_cov_0.865169_g195399_i0 PRJNA980839 199183 251 0.865169 2.17157419 Minisyncoccota bacterium 2053589 Bacteria Bacteria 49.3 1.84e-4   NR HMA78613.1 2053589 g195399 i0 61.8 0.406374501992032 34 13 40.6 0 103 2 6 39 HMA78613.1 PCRF domain-containing protein [Candidatus Paceibacterota bacterium] diamond 102 49.3 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28226188 28226188 PRJNA980839_P_NODE_64406_length_495_cov_2.007109_g60627_i0 PRJNA980839 64406 495 2.007109 9.93518955 Minisyncoccota bacterium 2053589 Bacteria Bacteria 149 3.3699999999999993e-40   NR HVX91236.1 2053589 g60627 i0 83.5 2.04848484848485 85 12 50.3 1 492 244 277 361 HVX91236.1 IS3 family transposase [Candidatus Paceibacterota bacterium] diamond 1014 149 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29016120 29016120 PRJNA980839_P_NODE_195448_length_252_cov_1.418994_g191664_i0 PRJNA980839 195448 252 1.418994 3.57586488 Minisyncoccota bacterium 2053589 Bacteria Bacteria 125 4.359999999999999e-32   NR MDR3548743.1 2053589 g191664 i0 69 1 84 25 100 1 1 252 231 313 MDR3548743.1 reverse transcriptase [Candidatus Paceibacterota bacterium] diamond 252 125 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29142340 29142340 PRJNA980839_P_NODE_234389_length_242_cov_0.911243_g230605_i0 PRJNA980839 234389 242 0.911243 2.20520806 Minisyncoccota bacterium 2053589 Bacteria Bacteria 61.2 3.15e-9   NR MFA6339055.1 2053589 g230605 i0 55.8 0.644628099173554 52 23 64.5 0 83 238 31 82 MFA6339055.1 class I SAM-dependent methyltransferase [Candidatus Paceibacterota bacterium] diamond 156 61.2 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;