RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA980839", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA980839 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28005624 28005624 PRJNA980839_P_NODE_156045_length_282_cov_1.105263_g152261_i0 PRJNA980839 156045 282 1.105263 3.11684166 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 49.3 2.91e-4   NR MFM2357274.1 2762014 g152261 i0 56.6 0.563829787234043 53 22 55.3 1 125 280 44 96 MFM2357274.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 159 49.3 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
28100029 28100029 PRJNA980839_P_NODE_192145_length_254_cov_1.701657_g188361_i0 PRJNA980839 192145 254 1.701657 4.32220878 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 47 0.00137   NR MFM2357274.1 2762014 g188361 i0 36.6 0.838582677165354 71 44 82.7 1 254 45 155 225 MFM2357274.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 213 47 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;