RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA980839", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA980839 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8610192 8610192 PRJNA980839_P_NODE_144527_length_292_cov_1.757991_g140743_i0 PRJNA980839 144527 292 1.757991 5.13333372 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 122 2.0299999999999998e-23   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g140743 i0 90.323 32.7671232876712 93 9 57 0 198 290 5302 5210 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9568 122 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
25496510 25496510 PRJNA980839_P_NODE_174660_length_267_cov_1.128866_g170876_i0 PRJNA980839 174660 267 1.128866 3.01407222 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 68.2 5.62e-11   NR XP_013762481.1 461836 g170876 i0 41.3 1.03370786516854 92 50 98.9 1 3 266 189 280 XP_013762481.1 thioester reductase domain-containing protein [Thecamonas trahens ATCC 50062] diamond 276 68.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
26677781 26677781 PRJNA980839_P_NODE_206341_length_249_cov_0.875000_g202557_i0 PRJNA980839 206341 249 0.875 2.17875 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 86.7 1.43e-17   NR XP_013759600.1 461836 g202557 i0 48.7 0.939759036144578 78 39 92.8 1 5 235 138 215 XP_013759600.1 uncharacterized protein AMSG_03687 [Thecamonas trahens ATCC 50062] diamond 234 86.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;