RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA980839", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA980839 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17538409 17538409 PRJNA980839_P_NODE_89374_length_390_cov_1.479495_g85590_i0 PRJNA980839 89374 390 1.479495 5.7700305 Vannella septentrionalis 197531 Discosea other_Eukaryota 161 5.939999999999998e-35   NTclustered gi|300078499|gb|GU001161.1| 197531 g85590 i0 80.952 29.8589743589744 210 35 53 5 40 247 2089 2295 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11645 161 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
27626714 27626714 PRJNA980839_P_NODE_218224_length_246_cov_0.890173_g214440_i0 PRJNA980839 218224 246 0.890173 2.18982558 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87 4.05e-18   NR XP_004333470.1 1257118 g214440 i0 67.9 0.682926829268293 56 18 68.3 0 78 245 67 122 XP_004333470.1 B-box zinc finger family protein [Acanthamoeba castellanii str. Neff] diamond 168 87 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29900055 29900055 PRJNA980839_P_NODE_222911_length_245_cov_0.895349_g219127_i0 PRJNA980839 222911 245 0.895349 2.19360505 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 60.1 3.01e-8   NR XP_004349733.1 1257118 g219127 i0 55.8 0.636734693877551 52 22 62.4 1 154 2 233 284 XP_004349733.1 protein kinase, putative [Acanthamoeba castellanii str. Neff] diamond 156 60.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30152388 30152388 PRJNA980839_P_NODE_217632_length_246_cov_0.890173_g213848_i0 PRJNA980839 217632 246 0.890173 2.18982558 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 93.6 4.97e-20   NR XP_004344955.1 1257118 g213848 i0 63.2 1.78048780487805 68 23 80.5 1 212 15 648 715 XP_004344955.1 uncharacterized protein ACA1_286130 [Acanthamoeba castellanii str. Neff] diamond 438 93.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32017669 32017669 PRJNA980839_P_NODE_150098_length_287_cov_1.373832_g146314_i0 PRJNA980839 150098 287 1.373832 3.94289784 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 103 5.15e-25   NR XP_004341123.1 1257118 g146314 i0 60.5 0.794425087108014 76 30 79.4 0 36 263 147 222 XP_004341123.1 GTPase activating Rap/RanGAP domainlike 3, putative [Acanthamoeba castellanii str. Neff] diamond 228 103 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32049307 32049307 PRJNA980839_P_NODE_172738_length_268_cov_1.579487_g168954_i0 PRJNA980839 172738 268 1.579487 4.23302516 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 112 1.22e-26   NR XP_004332814.1 1257118 g168954 i0 60 1.9365671641791 85 33 95.1 1 4 258 438 521 XP_004332814.1 myosin head (motor domain) domain containing protein [Acanthamoeba castellanii str. Neff] diamond 519 112 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32845061 32845061 PRJNA980839_P_NODE_201480_length_250_cov_0.870056_g197696_i0 PRJNA980839 201480 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 59.7 2.86e-8   NR XP_004334407.1 1257118 g197696 i0 57.1 1.176 49 20 57.6 1 249 106 214 262 XP_004334407.1 hydrolase, TatD family protein [Acanthamoeba castellanii str. Neff] diamond 294 59.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;