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contig_metadata

11 rows where bioproject = "PRJNA980587" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA980587 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
955864 955864 PRJNA980587_P_NODE_5661_length_1211_cov_8.995606_g5178_i0 PRJNA980587 5661 1211 8.995606 108.93678866 Copromyxa protea 931554 Tubulinea other_Eukaryota 894 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g5178 i0 84.945 11.5350949628406 910 107 73 21 274 1159 486 1389 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 13969 894 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
3506074 3506074 PRJNA980587_P_NODE_34303_length_405_cov_2.605422_g33510_i0 PRJNA980587 34303 405 2.605422 10.5519591 Amoeba proteus 5775 Tubulinea other_Eukaryota 236 3.78e-77   NR AAW58116.1 5775 g33510 i0 85.1 0.992592592592593 134 20 99.3 0 3 404 14 147 AAW58116.1 peroxiredoxin, partial [Amoeba proteus] diamond 402 236 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
11158904 11158904 PRJNA980587_P_NODE_30229_length_438_cov_3.712329_g29436_i0 PRJNA980587 30229 438 3.712329 16.26000102 Copromyxa protea 931554 Tubulinea other_Eukaryota 603 9.32e-168   NTclustered gi|508737347|dbj|AB766053.1| 931554 g29436 i0 91.879 26.1529680365297 431 35 98 0 8 438 491 61 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 11455 603 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
16258389 16258389 PRJNA980587_P_NODE_32113_length_422_cov_3.736390_g31320_i0 PRJNA980587 32113 422 3.73639 15.7675658 Amoeba proteus 5775 Tubulinea other_Eukaryota 259 3.65e-83   NR AAP88974.1 5775 g31320 i0 90 0.995260663507109 140 14 99.5 0 420 1 240 379 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 420 259 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
18807296 18807296 PRJNA980587_P_NODE_32615_length_418_cov_1.597101_g31822_i0 PRJNA980587 32615 418 1.597101 6.67588218 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 773 0   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g31822 i0 100 40.1411483253588 418 0 100 0 1 418 1295 1712 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 16779 773 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
21357489 21357489 PRJNA980587_P_NODE_28097_length_459_cov_4.329016_g27304_i0 PRJNA980587 28097 459 4.329016 19.87018344 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 721 0   NTclustered gi|33946358|gb|AY294158.1| 239731 g27304 i0 95.556 93.442265795207 450 20 98 0 10 459 1149 700 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 42890 721 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
29773388 29773388 PRJNA980587_P_NODE_22451_length_530_cov_1.746171_g21660_i0 PRJNA980587 22451 530 1.746171 9.2547063 Chaos carolinense 160823 Tubulinea other_Eukaryota 250 3.04e-82   NR AFX73058.1 160823 g21660 i0 81.8 1.74339622641509 154 28 87.2 0 530 69 7 160 AFX73058.1 14-3-3 protein, partial [Chaos carolinense] diamond 924 250 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense
29994782 29994782 PRJNA980587_P_NODE_35391_length_398_cov_1.332308_g34598_i0 PRJNA980587 35391 398 1.332308 5.30258584 Amoeba proteus 5775 Tubulinea other_Eukaryota 221 7.380000000000001e-70   NR AFX84537.1 5775 g34598 i0 85.4 0.92713567839196 123 18 92.7 0 397 29 173 295 AFX84537.1 alpha tubulin, partial [Amoeba proteus] diamond 369 221 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
31954286 31954286 PRJNA980587_P_NODE_79177_length_251_cov_0.865169_g78384_i0 PRJNA980587 79177 251 0.865169 2.17157419 Amoeba proteus 5775 Tubulinea other_Eukaryota 57.8 1.7e-7   NR BAF75060.1 5775 g78384 i0 56.4 0.657370517928287 55 22 63.3 1 159 1 9 63 BAF75060.1 aquaporin [Amoeba proteus] diamond 165 57.8 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
32112666 32112666 PRJNA980587_P_NODE_80318_length_250_cov_0.870056_g79525_i0 PRJNA980587 80318 250 0.870056 2.17514 Amoeba proteus 5775 Tubulinea other_Eukaryota 105 1.68e-25   NR AKN09693.1 5775 g79525 i0 56.6 0.996 83 36 99.6 0 2 250 109 191 AKN09693.1 metaxin [Amoeba proteus] diamond 249 105 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
32239415 32239415 PRJNA980587_P_NODE_52898_length_315_cov_1.909091_g52105_i0 PRJNA980587 52898 315 1.909091 6.01363665 Amoeba proteus 5775 Tubulinea other_Eukaryota 50.4 1.45e-4   NR AKN09692.1 5775 g52105 i0 33.3 0.742857142857143 78 50 74.3 2 4 237 3 78 AKN09692.1 Tom40 [Amoeba proteus] diamond 234 50.4 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;