RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA980587", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Kitrinoviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA980587 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11473378 11473378 PRJNA980587_P_NODE_93869_length_242_cov_0.899408_g93076_i0 PRJNA980587 93869 242 0.899408 2.17656736 Tobamovirus 12234 Viruses Viruses 446 8.559999999999998e-121   NTclustered gi|226235018|dbj|AB355139.1| 12253 g93076 i0 100 99.5867768595041 241 0 99 0 2 242 5134 4894 Tomato mosaic virus genomic RNA, complete genome, strain: L11Y blastn 24100 446 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
12748787 12748787 PRJNA980587_P_NODE_67590_length_275_cov_1.356436_g66797_i0 PRJNA980587 67590 275 1.356436 3.730199 Tobamovirus 12234 Viruses Viruses 503 5.809999999999998e-138   NTclustered gi|226235018|dbj|AB355139.1| 12253 g66797 i0 99.636 99.6072727272727 275 1 100 0 1 275 3392 3118 Tomato mosaic virus genomic RNA, complete genome, strain: L11Y blastn 27392 503 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
20395889 20395889 PRJNA980587_P_NODE_33396_length_412_cov_1.722714_g32603_i0 PRJNA980587 33396 412 1.722714 7.09758168 Tobamovirus 12234 Viruses Viruses 734 0   NTclustered gi|226235018|dbj|AB355139.1| 12253 g32603 i0 98.786 100.009708737864 412 5 100 0 1 412 3596 4007 Tomato mosaic virus genomic RNA, complete genome, strain: L11Y blastn 41204 734 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;