contig_metadata
10 rows where bioproject = "PRJNA980587", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13709820 | 13709820 | PRJNA980587_P_NODE_82811_length_248_cov_1.651429_g82018_i0 | PRJNA980587 | 82811 | 248 | 1.651429 | 4.09554392 | Nitrospira cf. moscoviensis SBR1 | 96242 | Bacteria | Bacteria | 176 | 6.41e-54 | NR | WP_087474405.1 | 96242 | g82018 | i0 | 98.8 | 0.991935483870968 | 82 | 1 | 99.2 | 0 | 248 | 3 | 49 | 130 | WP_087474405.1 imidazole glycerol phosphate synthase subunit HisH [Nitrospira cf. moscoviensis SBR1015] | diamond | 246 | 176 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira cf. moscoviensis SBR1015 | ||
| 25182435 | 25182435 | PRJNA980587_P_NODE_88920_length_245_cov_0.895349_g88127_i0 | PRJNA980587 | 88920 | 245 | 0.895349 | 2.19360505 | Nitrospira moscoviensis | 42253 | Bacteria | Bacteria | 420 | 5.26e-113 | NTclustered | gi|922305621|gb|CP011801.1| | 42253 | g88127 | i0 | 97.551 | 1 | 245 | 6 | 100 | 0 | 1 | 245 | 3165141 | 3164897 | Nitrospira moscoviensis strain NSP M-1, complete genome | blastn | 245 | 420 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira moscoviensis | ||
| 25182469 | 25182469 | PRJNA980587_P_NODE_91120_length_243_cov_0.905882_g90327_i0 | PRJNA980587 | 91120 | 243 | 0.905882 | 2.20129326 | Nitrospira japonica | 1325564 | Bacteria | Bacteria | 100 | 7.71e-17 | NTclustered | gi|1167499077|emb|LT828648.1| | 1325564 | g90327 | i0 | 84.404 | 7.5679012345679 | 109 | 10 | 43 | 7 | 139 | 243 | 2390396 | 2390291 | Nitrospira japonica isolate Genome sequencing of Nitrospira japonica strain NJ11 genome assembly, chromosome: I | blastn | 1839 | 100 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira japonica | ||
| 27847379 | 27847379 | PRJNA980587_P_NODE_94564_length_241_cov_0.916667_g93771_i0 | PRJNA980587 | 94564 | 241 | 0.916667 | 2.20916747 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 50.4 | 3.82e-5 | NR | MBW8055891.1 | 70125 | g93771 | i0 | 33.8 | 0.95850622406639 | 77 | 51 | 95.9 | 0 | 11 | 241 | 65 | 141 | MBW8055891.1 ankyrin repeat domain-containing protein [Nitrospira sp.] | diamond | 231 | 50.4 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 28889377 | 28889377 | PRJNA980587_P_NODE_82308_length_249_cov_0.875000_g81515_i0 | PRJNA980587 | 82308 | 249 | 0.875 | 2.17875 | Nitrospiraceae bacterium | 2026770 | Bacteria | Bacteria | 118 | 1.1599999999999999e-28 | NR | MBX9657363.1 | 2026770 | g81515 | i0 | 89.7 | 0.819277108433735 | 68 | 7 | 81.9 | 0 | 248 | 45 | 806 | 873 | MBX9657363.1 sigma 54-interacting transcriptional regulator [Nitrospiraceae bacterium] | diamond | 204 | 118 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospiraceae bacterium | |||
| 29495442 | 29495442 | PRJNA980587_P_NODE_80190_length_250_cov_0.870056_g79397_i0 | PRJNA980587 | 80190 | 250 | 0.870056 | 2.17514 | Nitrospira | 1234 | Bacteria | Bacteria | 89.4 | 6.18e-20 | NR | MBH0194432.1 | 70125 | g79397 | i0 | 95.8 | 1.176 | 48 | 2 | 57.6 | 0 | 2 | 145 | 152 | 199 | MBH0194432.1 NAD-dependent deacylase [Nitrospira sp.] | diamond | 294 | 90.1 | 0.992230854605993 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 31137871 | 31137871 | PRJNA980587_P_NODE_75335_length_257_cov_2.951087_g74542_i0 | PRJNA980587 | 75335 | 257 | 2.951087 | 7.58429359 | Nitrospira | 1234 | Bacteria | Bacteria | 41.6 | 0.0222 | NR | GJL57676.1 | 2358460 | g74542 | i0 | 61.9 | 0.957198443579767 | 21 | 8 | 24.5 | 0 | 50 | 112 | 10 | 30 | GJL57676.1 MAG: hypothetical protein NPIRA03_05330 [Nitrospirales bacterium] | diamond | 246 | 41.6 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospirales bacterium | ||||
| 31732817 | 31732817 | PRJNA980587_P_NODE_89197_length_244_cov_1.701754_g88404_i0 | PRJNA980587 | 89197 | 244 | 1.701754 | 4.15227976 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 151 | 1.21e-41 | NR | MBH0192550.1 | 70125 | g88404 | i0 | 98.8 | 0.995901639344262 | 81 | 1 | 99.6 | 0 | 243 | 1 | 107 | 187 | MBH0192550.1 PAS domain S-box protein [Nitrospira sp.] | diamond | 243 | 151 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 31891071 | 31891071 | PRJNA980587_P_NODE_96197_length_232_cov_3.308176_g95404_i0 | PRJNA980587 | 96197 | 232 | 3.308176 | 7.67496832 | Nitrospira sp. | 70125 | Bacteria | Bacteria | 65.1 | 3.71e-10 | NR | MDH5738715.1 | 70125 | g95404 | i0 | 50.7 | 0.969827586206897 | 75 | 36 | 97 | 1 | 8 | 232 | 88 | 161 | MDH5738715.1 hypothetical protein [Nitrospira sp.] | diamond | 225 | 65.1 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospiria | Nitrospirales | Nitrospiraceae | Nitrospira | Nitrospira sp. | ||
| 32302766 | 32302766 | PRJNA980587_P_NODE_66959_length_276_cov_1.896552_g66166_i0 | PRJNA980587 | 66959 | 276 | 1.896552 | 5.23448352 | Nitrospirota bacterium | 2026887 | Bacteria | Bacteria | 81.6 | 1.15e-15 | NR | MEW6324954.1 | 2026887 | g66166 | i0 | 69 | 1.32608695652174 | 58 | 18 | 63 | 0 | 176 | 3 | 8 | 65 | MEW6324954.1 pyruvate, phosphate dikinase [Nitrospirota bacterium] | diamond | 366 | 81.6 | 1 | Bacteria | Pseudomonadati | Nitrospirota | Nitrospirota bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;