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contig_metadata

21 rows where bioproject = "PRJNA980587", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 21 ✖

tax_kingdom 1

  • Pseudomonadati · 21 ✖

bioproject 1

  • PRJNA980587 · 21 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1269591 1269591 PRJNA980587_P_NODE_6981_length_1077_cov_8.260956_g6423_i0 PRJNA980587 6981 1077 8.260956 88.97049612 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 124 4.54e-30   NR MCB0369154.1 2053517 g6423 i0 48.9 0.799442896935933 141 62 39 4 412 831 16 147 MCB0369154.1 C39 family peptidase [Bdellovibrionales bacterium] diamond 861 124 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
11159197 11159197 PRJNA980587_P_NODE_54349_length_311_cov_0.945378_g53556_i0 PRJNA980587 54349 311 0.945378 2.94012558 Peredibacter starrii 28202 Bacteria Bacteria 555 1.8199999999999994e-153   NTclustered gi|2631252187|gb|CP139487.1| 28202 g53556 i0 99.032 58.6237942122186 310 2 99 1 1 309 512008 512317 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 18232 555 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
12434492 12434492 PRJNA980587_P_NODE_10250_length_868_cov_2.031447_g9573_i0 PRJNA980587 10250 868 2.031447 17.63295996 Halobacteriovorax sp. 2020862 Bacteria Bacteria 201 1.44e-58   NR MBK23259.1 2020862 g9573 i0 58.6 2.39861751152074 174 70 59.8 2 1 519 197 369 MBK23259.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [Halobacteriovorax sp.] diamond 2082 201 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp.
25182328 25182328 PRJNA980587_P_NODE_81720_length_249_cov_0.875000_g80927_i0 PRJNA980587 81720 249 0.875 2.17875 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 155 4.9099999999999996e-42   NR MBX3021635.1 2053517 g80927 i0 85.5 1 83 12 100 0 249 1 116 198 MBX3021635.1 elongation factor G [Bdellovibrionales bacterium] diamond 249 155 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
26804581 26804581 PRJNA980587_P_NODE_51841_length_319_cov_1.252033_g51048_i0 PRJNA980587 51841 319 1.252033 3.99398527 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 52.8 2.69e-5   NR MDY0008143.1 2053517 g51048 i0 36.1 3.70532915360502 83 52 78.1 1 254 6 463 544 MDY0008143.1 ankyrin repeat domain-containing protein [Bdellovibrionales bacterium] diamond 1182 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27437313 27437313 PRJNA980587_P_NODE_82563_length_249_cov_0.875000_g81770_i0 PRJNA980587 82563 249 0.875 2.17875 Bdellovibrionia bacterium 3034169 Bacteria Bacteria 84 1.22e-16   NR MFL5813012.1 3034169 g81770 i0 53.8 0.963855421686747 80 35 96.4 2 247 8 537 614 MFL5813012.1 M3 family metallopeptidase [Bdellovibrionia bacterium] diamond 240 84 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia       Bdellovibrionia bacterium
27531776 27531776 PRJNA980587_P_NODE_75803_length_256_cov_2.295082_g75010_i0 PRJNA980587 75803 256 2.295082 5.87540992 Micavibrio sp. 2024841 Bacteria Bacteria 43.9 0.0176   NR MAS87354.1 2024841 g75010 i0 34.6 0.94921875 81 51 94.9 1 2 244 489 567 MAS87354.1 2-oxoglutarate dehydrogenase E1 component [Micavibrio sp.] diamond 243 43.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
27595074 27595074 PRJNA980587_P_NODE_92984_length_242_cov_0.911243_g92191_i0 PRJNA980587 92984 242 0.911243 2.20520806 Halobacteriovorax marinus 97084 Bacteria Bacteria 69.3 1.6e-11   NR OUR98507.1 97084 g92191 i0 39.7 3.86776859504132 78 47 96.7 0 235 2 852 929 OUR98507.1 isoleucine--tRNA ligase [Halobacteriovorax marinus] diamond 936 69.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax marinus
27910401 27910401 PRJNA980587_P_NODE_72025_length_265_cov_1.458333_g71232_i0 PRJNA980587 72025 265 1.458333 3.86458245 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 126 2.4e-34   NR MBX3020991.1 2053517 g71232 i0 75.6 0.883018867924528 78 19 88.3 0 31 264 1 78 MBX3020991.1 DNA-3-methyladenine glycosylase [Bdellovibrionales bacterium] diamond 234 126 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27973812 27973812 PRJNA980587_P_NODE_50845_length_322_cov_1.823293_g50052_i0 PRJNA980587 50845 322 1.823293 5.87100346 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 127 1.23e-31   NR MBC7370521.1 2026715 g50052 i0 55.7 0.987577639751553 106 47 98.8 0 320 3 506 611 MBC7370521.1 5-histidylcysteine sulfoxide synthase [Pseudobdellovibrionaceae bacterium] diamond 318 127 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
28668580 28668580 PRJNA980587_P_NODE_96687_length_225_cov_4.026316_g95894_i0 PRJNA980587 96687 225 4.026316 9.059211 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 55.8 6.71e-7   NR MFN8792340.1 2053517 g95894 i0 69.4 0.933333333333333 36 11 48 0 2 109 349 384 MFN8792340.1 cystathionine gamma-synthase [Bdellovibrionales bacterium] diamond 210 55.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28920867 28920867 PRJNA980587_P_NODE_76288_length_255_cov_1.917582_g75495_i0 PRJNA980587 76288 255 1.917582 4.8898341 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 77 3.59e-14   NR WP_015468752.1 453816 g75495 i0 45.2 0.988235294117647 84 42 98.8 2 253 2 298 377 WP_015468752.1 thrombospondin type-1 domain-containing protein [Pseudobdellovibrio exovorus] diamond 252 77 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
29079049 29079049 PRJNA980587_P_NODE_72568_length_264_cov_1.209424_g71775_i0 PRJNA980587 72568 264 1.209424 3.19287936 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 63.9 1.61e-9   NR WP_015468758.1 453816 g71775 i0 47.6 1.36363636363636 63 32 70.5 1 3 188 378 440 WP_015468758.1 thrombospondin type-1 domain-containing protein [Pseudobdellovibrio exovorus] diamond 360 63.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
29205377 29205377 PRJNA980587_P_NODE_35169_length_399_cov_2.723926_g34376_i0 PRJNA980587 35169 399 2.723926 10.86846474 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 83.6 1.06e-15   NR WP_015468752.1 453816 g34376 i0 52.1 0.533834586466165 71 32 51.9 2 232 26 334 404 WP_015468752.1 thrombospondin type-1 domain-containing protein [Pseudobdellovibrio exovorus] diamond 213 83.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
29741689 29741689 PRJNA980587_P_NODE_66190_length_278_cov_1.502439_g65397_i0 PRJNA980587 66190 278 1.502439 4.17678042 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 43.5 0.0302   NR MCM2350925.1 2081706 g65397 i0 34.9 0.89568345323741 83 45 79.9 3 9 230 455 537 MCM2350925.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 249 43.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29931640 29931640 PRJNA980587_P_NODE_96031_length_235_cov_2.432099_g95238_i0 PRJNA980587 96031 235 2.432099 5.71543265 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 116 1.12e-30   NR MBX9767865.1 2053517 g95238 i0 66.7 0.995744680851064 78 26 99.6 0 2 235 73 150 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 234 116 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31194845 31194845 PRJNA980587_P_NODE_94595_length_241_cov_0.916667_g93802_i0 PRJNA980587 94595 241 0.916667 2.20916747 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 61.6 7.79e-9   NR MCB0393559.1 2053517 g93802 i0 58.3 1.3195020746888 48 18 59.8 1 155 12 45 90 MCB0393559.1 biosynthetic arginine decarboxylase [Bdellovibrionales bacterium] diamond 318 61.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31897203 31897203 PRJNA980587_P_NODE_89817_length_244_cov_0.900585_g89024_i0 PRJNA980587 89817 244 0.900585 2.1974274 Pseudomonadati 3379134 Bacteria Bacteria 72 1.81e-12   NR MFN8847391.1 2053517 g89024 i0 70 1.95491803278689 50 15 61.5 0 155 6 1046 1095 MFN8847391.1 tail fiber domain-containing protein [Bdellovibrionales bacterium] diamond 477 72 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31954277 31954277 PRJNA980587_P_NODE_44137_length_348_cov_1.661818_g43344_i0 PRJNA980587 44137 348 1.661818 5.78312664 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 77.4 8.19e-14   NR MFT6069596.1 2081706 g43344 i0 48.8 2.12068965517241 80 41 69 0 340 101 409 488 MFT6069596.1 leucyl aminopeptidase [Bacteriovoracaceae bacterium] diamond 738 77.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
32080860 32080860 PRJNA980587_P_NODE_18678_length_595_cov_1.879310_g17895_i0 PRJNA980587 18678 595 1.87931 11.1818945 Bdellovibrionales bacterium RBG_16_4 2053517 Bacteria Bacteria 48.1 0.0106   NR OFZ12118.1 1797388 g17895 i0 36.9 0.746218487394958 65 41 32.8 0 179 373 427 491 OFZ12118.1 MAG: hypothetical protein A2Z20_07270 [Bdellovibrionales bacterium RBG_16_40_8] diamond 444 48.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RBG_16_40_8
32239411 32239411 PRJNA980587_P_NODE_23178_length_519_cov_1.697309_g22387_i0 PRJNA980587 23178 519 1.697309 8.80903371 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 90.5 1.49e-17   NR WP_015468752.1 453816 g22387 i0 55.7 0.456647398843931 79 30 43.9 2 517 290 318 394 WP_015468752.1 thrombospondin type-1 domain-containing protein [Pseudobdellovibrio exovorus] diamond 237 90.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;