RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA980587", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA980587 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27468750 27468750 PRJNA980587_P_NODE_95743_length_239_cov_3.325301_g94950_i0 PRJNA980587 95743 239 3.325301 7.94746939 Armatimonadetes bacterium DC 1661583 Bacteria Bacteria 146 1.0299999999999999e-38   NR CUU34639.1 1661583 g94950 i0 100 0.99163179916318 79 0 99.2 0 238 2 538 616 CUU34639.1 cell surface protein SprA [Armatimonadetes bacterium DC] diamond 237 146 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium DC
31891064 31891064 PRJNA980587_P_NODE_58577_length_298_cov_1.026667_g57784_i0 PRJNA980587 58577 298 1.026667 3.05946766 Armatimonadota bacterium 2033014 Bacteria Bacteria 63.5 2.96e-9   NR MBN1457888.1 2033014 g57784 i0 45.9 3.34228187919463 61 33 61.4 0 107 289 5 65 MBN1457888.1 NAD(P)-dependent glycerol-3-phosphate dehydrogenase [Armatimonadota bacterium] diamond 996 63.5 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32270933 32270933 PRJNA980587_P_NODE_94838_length_241_cov_0.916667_g94045_i0 PRJNA980587 94838 241 0.916667 2.20916747 Armatimonadota bacterium 2033014 Bacteria Bacteria 57.4 2.39e-7   NR MCH8273652.1 2033014 g94045 i0 42.9 1.92946058091286 77 44 95.9 0 236 6 362 438 MCH8273652.1 DASS family sodium-coupled anion symporter [Armatimonadota bacterium] diamond 465 57.4 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;