RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA980587", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA980587 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3505950 3505950 PRJNA980587_P_NODE_22103_length_535_cov_1.694805_g21312_i0 PRJNA980587 22103 535 1.694805 9.06720675 Myxococcota 2818505 Bacteria Bacteria 111 5.729999999999999e-28   NR OGQ88263.1 1797895 g21312 i0 58.9 1.45233644859813 90 36 50.5 1 63 332 5 93 OGQ88263.1 MAG: RNA-binding protein [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 777 111 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
30215635 30215635 PRJNA980587_P_NODE_39512_length_372_cov_1.023411_g38719_i0 PRJNA980587 39512 372 1.023411 3.80708892 Deltaproteobacteria bacterium RBG_16_71_12 1797848 Bacteria Bacteria 44.3 0.0431   NR OGQ25304.1 1797848 g38719 i0 28.5 0.991935483870968 123 76 94.4 4 355 5 49 165 OGQ25304.1 MAG: hypothetical protein A2138_04655 [Deltaproteobacteria bacterium RBG_16_71_12] diamond 369 44.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_16_71_12
32245575 32245575 PRJNA980587_P_NODE_40278_length_367_cov_1.843537_g39485_i0 PRJNA980587 40278 367 1.843537 6.76578079 Pseudomonadota 1224 Bacteria Bacteria 47 0.00109   NR OGR09579.1 1797899 g39485 i0 39 1.18528610354223 59 35 48.2 1 189 365 50 107 OGR09579.1 MAG: MbtH domain protein [Deltaproteobacteria bacterium RIFOXYB12_FULL_58_9] diamond 435 47.4 0.991561181434599 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYB12_FULL_58_9

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;