RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA980587", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA980587 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30311089 30311089 PRJNA980587_P_NODE_7992_length_1000_cov_2.912621_g7390_i0 PRJNA980587 7992 1000 2.912621 29.12621 Methanosphaera sp. 2666342 Archaea Archaea 224 5.5599999999999996e-67   NR MEE3325635.1 2666342 g7390 i0 41.4 2.673 292 152 83.7 5 55 891 3 288 MEE3325635.1 C13 family peptidase [Methanosphaera sp.] diamond 2673 224 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
32460756 32460756 PRJNA980587_P_NODE_17519_length_619_cov_2.551282_g16741_i0 PRJNA980587 17519 619 2.551282 15.79243558 Methanobrevibacter sp. 66852 Archaea Archaea 53.9 1.37e-4   NR MBO7517911.1 66852 g16741 i0 29.6 1.19224555735057 115 70 55.3 3 4 345 407 511 MBO7517911.1 hypothetical protein [Methanobrevibacter sp.] diamond 738 53.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;