RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA980587", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 10 ✖

tax_clade 1

  • Metamonada · 10 ✖

bioproject 1

  • PRJNA980587 · 10 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26962736 26962736 PRJNA980587_P_NODE_10582_length_851_cov_9.611825_g9896_i0 PRJNA980587 10582 851 9.611825 81.79663075 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 182 2.299999999999999e-53   NR XP_001299092.1 412133 g9896 i0 46.2 0.694477085781434 197 101 69.1 3 793 206 3 195 XP_001299092.1 peroxiredoxin protein [Trichomonas vaginalis G3] diamond 591 182 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28068489 28068489 PRJNA980587_P_NODE_24065_length_507_cov_2.032258_g23274_i0 PRJNA980587 24065 507 2.032258 10.30354806 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 75.5 1.05e-12   NR XP_067777444.1 135588 g23274 i0 71.9 2.63905325443787 57 16 33.7 0 451 281 5 61 XP_067777444.1 LysM peptidoglycan-binding domain-containing protein [Histomonas meleagridis] diamond 1338 75.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
29741699 29741699 PRJNA980587_P_NODE_94090_length_241_cov_1.809524_g93297_i0 PRJNA980587 94090 241 1.809524 4.36095284 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 47.8 6.01e-4   NR XP_001322334.1 412133 g93297 i0 32.5 0.995850622406639 80 53 98.3 1 5 241 268 347 XP_001322334.1 G-protein beta/gamma-subunit complex binding [Trichomonas vaginalis G3] diamond 240 47.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30689590 30689590 PRJNA980587_P_NODE_57133_length_302_cov_1.344978_g56340_i0 PRJNA980587 57133 302 1.344978 4.06183356 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 68.6 5.81e-11   NR XP_067774855.1 135588 g56340 i0 49.3 2.66225165562914 67 34 66.6 0 101 301 170 236 XP_067774855.1 Guanine nucleotide-binding protein alpha-1 subunit [Histomonas meleagridis] diamond 804 68.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30879233 30879233 PRJNA980587_P_NODE_87634_length_245_cov_1.598837_g86841_i0 PRJNA980587 87634 245 1.598837 3.91715065 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 54.3 3.24e-6   NR XP_067775293.1 135588 g86841 i0 34.3 1.55510204081633 70 46 85.7 0 31 240 2 71 XP_067775293.1 calcium-translocating P-type ATPase, PMCA-type family protein [Histomonas meleagridis] diamond 381 54.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30911047 30911047 PRJNA980587_P_NODE_95514_length_241_cov_0.916667_g94721_i0 PRJNA980587 95514 241 0.916667 2.20916747 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 41.6 0.0242   NR XP_067772483.1 135588 g94721 i0 32.7 0.684647302904564 55 37 68.5 0 220 56 1 55 XP_067772483.1 MORN repeat-containing protein 5 isoform X1 [Histomonas meleagridis] diamond 165 41.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30974189 30974189 PRJNA980587_P_NODE_25114_length_494_cov_2.116390_g24323_i0 PRJNA980587 25114 494 2.11639 10.4549666 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 189 7.59e-58   NR XP_068360038.1 1144522 g24323 i0 58.8 8.81174089068826 160 66 97.2 0 482 3 5 164 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 4353 189 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31232783 31232783 PRJNA980587_P_NODE_94955_length_241_cov_0.916667_g94162_i0 PRJNA980587 94955 241 0.916667 2.20916747 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 58.5 9.67e-8   NR XP_068350514.1 1144522 g94162 i0 43.3 3.78423236514523 67 35 83.4 2 234 34 104 167 XP_068350514.1 uncharacterized protein TRFO_36378 [Tritrichomonas foetus] diamond 912 58.9 0.99320882852292 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31359634 31359634 PRJNA980587_P_NODE_6536_length_1117_cov_9.611111_g6000_i0 PRJNA980587 6536 1117 9.611111 107.35610987 root 1 Root_unresolved Root_unresolved 151 2.5499999999999998e-40   NR XP_001299092.1 412133 g6000 i0 43.5 12.8084153983885 193 100 50.2 5 918 358 3 192 XP_001299092.1 peroxiredoxin protein [Trichomonas vaginalis G3] diamond 14307 151 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31416660 31416660 PRJNA980587_P_NODE_75136_length_258_cov_1.367568_g74343_i0 PRJNA980587 75136 258 1.367568 3.52832544 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 62.8 3.99e-9   NR XP_001309937.1 412133 g74343 i0 47.1 1.86046511627907 70 36 81.4 1 47 256 875 943 XP_001309937.1 C2 domain-containing protein family [Trichomonas vaginalis G3] diamond 480 62.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;