RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA980587", tax_clade = "FCB group" and tax_phylum = "Fidelibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fidelibacterota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA980587 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29552290 29552290 PRJNA980587_P_NODE_91970_length_243_cov_0.905882_g91177_i0 PRJNA980587 91970 243 0.905882 2.20129326 Fidelibacterota bacterium 2026760 Bacteria Bacteria 44.7 0.00187   NR MFQ6616822.1 2026760 g91177 i0 44.1 2.83950617283951 68 33 82.7 2 242 42 29 92 MFQ6616822.1 YbaB/EbfC family nucleoid-associated protein [Fidelibacterota bacterium] diamond 690 44.7 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
31200921 31200921 PRJNA980587_P_NODE_79435_length_251_cov_0.865169_g78642_i0 PRJNA980587 79435 251 0.865169 2.17157419 Bacteria 2 Bacteria Bacteria 64.7 1.94e-11   NR OIO64037.1 1805240 g78642 i0 44.8 3.78884462151394 67 37 80.1 0 203 3 5 71 OIO64037.1 MAG: 30S ribosomal protein S17 [Fidelibacterota bacterium CG1_02_48_14] diamond 951 64.7 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium CG1_02_48_14
31321682 31321682 PRJNA980587_P_NODE_16395_length_645_cov_3.059441_g15622_i0 PRJNA980587 16395 645 3.059441 19.73339445 Fidelibacterota bacterium 2026760 Bacteria Bacteria 117 5.4000000000000005e-27   NR MBO8131779.1 2026760 g15622 i0 60.2 3.2 98 37 45.1 2 627 337 289 385 MBO8131779.1 phosphoglycerate kinase [Fidelibacterota bacterium] diamond 2064 117 1 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium
32118801 32118801 PRJNA980587_P_NODE_40158_length_368_cov_1.288136_g39365_i0 PRJNA980587 40158 368 1.288136 4.74034048 Bacteria 2 Bacteria Bacteria 85.5 1.35e-18   NR MCH7575596.1 2026760 g39365 i0 45.2 3.53804347826087 84 46 68.5 0 55 306 34 117 MCH7575596.1 DUF423 domain-containing protein [Fidelibacterota bacterium] diamond 1302 85.9 0.9953434225844 Bacteria FCB group Pseudomonadati Fidelibacterota         Fidelibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;