RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA980587", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA980587 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28226108 28226108 PRJNA980587_P_NODE_43906_length_349_cov_1.637681_g43113_i0 PRJNA980587 43906 349 1.637681 5.71550669 Chlorobiota bacterium 2268192 Bacteria Bacteria 76.6 5.13e-15   NR MBL0332447.1 2268192 g43113 i0 62.1 0.498567335243553 58 22 49.9 0 173 346 7 64 MBL0332447.1 RidA family protein [Chlorobiota bacterium] diamond 174 76.6 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
32681269 32681269 PRJNA980587_P_NODE_18500_length_599_cov_1.705323_g17717_i0 PRJNA980587 18500 599 1.705323 10.21488477 Chlorobiota bacterium 2268192 Bacteria Bacteria 125 3.89e-33   NR MCE2502883.1 2268192 g17717 i0 60.4 2.12854757929883 106 40 53.1 1 597 280 35 138 MCE2502883.1 RidA family protein [Chlorobiota bacterium] diamond 1275 125 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;