RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA980585", tax_phylum = "Peploviricota" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Peploviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA980585 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11473152 11473152 PRJNA980585_P_NODE_35129_length_265_cov_1.604167_g34875_i0 PRJNA980585 35129 265 1.604167 4.25104255 Varicellovirus 10319 Viruses Viruses 54.7 0.007   NTclustered gi|2509460603|gb|OQ669137.1| 10320 g34875 i0 100 0.437735849056604 29 0 11 0 139 167 44767 44739 Bovine alphaherpesvirus 1 isolate HeiferVagina-S102_1, partial genome blastn 116 54.7 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Varicellovirus Varicellovirus bovinealpha1
16257705 16257705 PRJNA980585_P_NODE_36353_length_262_cov_1.386243_g36099_i0 PRJNA980585 36353 262 1.386243 3.63195666 Rhadinovirus saimiriinegamma2 3050350 Viruses Viruses 91.6 5.07e-14   NTclustered gi|30348412|emb|AJ410478.1| 10381 g36099 i0 86.207 18.3893129770992 87 9 33 2 133 219 152 235 Saimiriine herpesvirus 2 stpC and tip genes, strain C5952 blastn 4818 91.6 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Rhadinovirus Rhadinovirus saimiriinegamma2

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;