RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA980585" and tax_phylum = "Negarnaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA980585 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2545039 2545039 PRJNA980585_P_NODE_3702_length_641_cov_2.579225_g3451_i0 PRJNA980585 3702 641 2.579225 16.53283225 root 1 Root_unresolved Root_unresolved 1155 0   NTclustered gi|2067732485|gb|MT994243.1| 11250 g3451 i0 99.219 102.897035881435 640 5 99 0 2 641 2575 3214 Mutant Human orthopneumovirus isolate recombinant hRSV-P-BFP, complete genome blastn 65957 1162 0.993975903614458 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Pneumoviridae Orthopneumovirus Orthopneumovirus hominis
8922344 8922344 PRJNA980585_P_NODE_54567_length_244_cov_0.900585_g54313_i0 PRJNA980585 54567 244 0.900585 2.1974274 Orthorubulavirus 2560195 Viruses Viruses 442 1.1199999999999994e-119   NTclustered gi|1806608684|gb|MN604146.1| 2560580 g54313 i0 99.587 68.2131147540984 242 1 99 0 3 244 1634 1393 Mammalian orthorubulavirus 5 isolate XJ033, complete genome blastn 16644 442 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthorubulavirus Orthorubulavirus mammalis
10198084 10198084 PRJNA980585_P_NODE_59628_length_241_cov_1.732143_g59374_i0 PRJNA980585 59628 241 1.732143 4.17446463 Orthorubulavirus 2560195 Viruses Viruses 446 8.519999999999999e-121   NTclustered gi|1806608684|gb|MN604146.1| 2560580 g59374 i0 100 83.8423236514523 241 0 100 0 1 241 7180 7420 Mammalian orthorubulavirus 5 isolate XJ033, complete genome blastn 20206 446 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthorubulavirus Orthorubulavirus mammalis
14023260 14023260 PRJNA980585_P_NODE_45011_length_249_cov_0.875000_g44757_i0 PRJNA980585 45011 249 0.875 2.17875 Orthorubulavirus 2560195 Viruses Viruses 457 4.09e-124   NTclustered gi|1540352612|gb|MK117734.1| 2560580 g44757 i0 100 97.1325301204819 247 0 99 0 3 249 254 8 Mammalian orthorubulavirus 5 isolate XJ-WLMQ fusion protein mRNA, complete cds blastn 24186 457 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthorubulavirus Orthorubulavirus mammalis
17846848 17846848 PRJNA980585_P_NODE_13014_length_380_cov_1.690554_g12760_i0 PRJNA980585 13014 380 1.690554 6.4241052 Orthorubulavirus 2560195 Viruses Viruses 691 0   NTclustered gi|1806608684|gb|MN604146.1| 2560580 g12760 i0 99.474 88.2026315789474 380 2 100 0 1 380 636 257 Mammalian orthorubulavirus 5 isolate XJ033, complete genome blastn 33517 691 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthorubulavirus Orthorubulavirus mammalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;