RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA980585", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA980585 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14982671 14982671 PRJNA980585_P_NODE_34532_length_267_cov_1.443299_g34278_i0 PRJNA980585 34532 267 1.443299 3.85360833 Lentisphaerota bacterium 1932692 Bacteria Bacteria 110 2.07e-26   NR MBM4142552.1 1932692 g34278 i0 58.4 4 89 37 100 0 267 1 281 369 MBM4142552.1 argininosuccinate synthase [Lentisphaerota bacterium] diamond 1068 110 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
27279135 27279135 PRJNA980585_P_NODE_38043_length_257_cov_1.673913_g37789_i0 PRJNA980585 38043 257 1.673913 4.30195641 Lentisphaeria bacterium 2053569 Bacteria Bacteria 60.5 5.72e-9   NR MBO5802610.1 2053569 g37789 i0 44.6 0.75875486381323 65 32 71.2 3 68 250 19 83 MBO5802610.1 FHA domain-containing protein [Lentisphaeria bacterium] diamond 195 60.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
30443171 30443171 PRJNA980585_P_NODE_49033_length_247_cov_0.885057_g48779_i0 PRJNA980585 49033 247 0.885057 2.18609079 Pseudomonadati 3379134 Bacteria Bacteria 102 8.96e-24   NR NLC81328.1 1932692 g48779 i0 55 6.87449392712551 80 36 97.2 0 3 242 109 188 NLC81328.1 galactose mutarotase [Lentisphaerota bacterium] diamond 1698 102 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;