RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA980585", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA980585 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30531624 30531624 PRJNA980585_P_NODE_28073_length_285_cov_1.301887_g27819_i0 PRJNA980585 28073 285 1.301887 3.71037795 Chitinivibrionales bacterium 2663014 Bacteria Bacteria 77.8 2.81e-14   NR MDD5674973.1 2663014 g27819 i0 42.6 0.989473684210526 94 52 96.8 1 281 6 191 284 MDD5674973.1 glycosyltransferase [Chitinivibrionales bacterium] diamond 282 77.8 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales     Chitinivibrionales bacterium
31226656 31226656 PRJNA980585_P_NODE_14095_length_368_cov_3.115254_g13841_i0 PRJNA980585 14095 368 3.115254 11.46413472 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 45.4 0.0155   NR MFP4415963.1 2813024 g13841 i0 31.8 0.717391304347826 88 53 66 2 63 305 277 364 MFP4415963.1 aminopeptidase [Chitinispirillaceae bacterium] diamond 264 45.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium
31517750 31517750 PRJNA980585_P_NODE_29216_length_282_cov_1.105263_g28962_i0 PRJNA980585 29216 282 1.105263 3.11684166 root 1 Root_unresolved Root_unresolved 101 1.3e-23   NR WP_407444408.1 35828 g28962 i0 52.2 7.53191489361702 92 44 97.9 0 5 280 13 104 WP_407444408.1 phosphoglycerate kinase, partial [Fibrobacter sp.] diamond 2124 101 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;