RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA980585", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Peregrinibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA980585 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30120803 30120803 PRJNA980585_P_NODE_1292_length_1003_cov_4.002151_g1114_i0 PRJNA980585 1292 1003 4.002151 40.14157453 Candidatus Peregrinibacteria bacterium 2030811 Bacteria Bacteria 68.9 1.01e-8   NR MFH0770375.1 2030811 g1114 i0 40 0.373878364905284 125 61 34.1 6 59 400 566 687 MFH0770375.1 S-layer homology domain-containing protein [Candidatus Peregrinibacteria bacterium] diamond 375 68.9 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium
31738835 31738835 PRJNA980585_P_NODE_5797_length_530_cov_1.341357_g5543_i0 PRJNA980585 5797 530 1.341357 7.1091921 Bacteria 2 Bacteria Bacteria 150 7.2e-40   NR OGJ41832.1 1801897 g5543 i0 71.6 2.30943396226415 102 29 57.7 0 225 530 1 102 OGJ41832.1 MAG: argininosuccinate synthase [Candidatus Peregrinibacteria bacterium RIFCSPLOWO2_01_FULL_39_12] diamond 1224 151 0.993377483443709 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium RIFCSPLOWO2_01_FULL_39_12
32397460 32397460 PRJNA980585_P_NODE_3719_length_640_cov_1.664903_g3468_i0 PRJNA980585 3719 640 1.664903 10.6553792 Candidatus Peribacterales bacterium 2711152 Bacteria Bacteria 47 0.0401   NR HLC76253.1 2711152 g3468 i0 32.6 0.403125 86 51 37.5 3 343 104 1028 1112 HLC76253.1 hypothetical protein [Candidatus Peribacterales bacterium] diamond 258 47 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria Candidatus Peribacterales     Candidatus Peribacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;