RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA980585", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Bipolaricaulota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Bipolaricaulota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA980585 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28637033 28637033 PRJNA980585_P_NODE_21747_length_313_cov_1.550000_g21493_i0 PRJNA980585 21747 313 1.55 4.8515 Candidatus Bipolaricaulota bacterium 2306012 Bacteria Bacteria 49.7 1.22e-4   NR MCX7844984.1 2306012 g21493 i0 49.3 0.661341853035144 69 35 66.1 0 309 103 93 161 MCX7844984.1 S-layer homology domain-containing protein [Candidatus Bipolaricaulota bacterium] diamond 207 49.7 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota         Candidatus Bipolaricaulota bacterium
30689547 30689547 PRJNA980585_P_NODE_21113_length_317_cov_1.262295_g20859_i0 PRJNA980585 21113 317 1.262295 4.00147515 Candidatus Bipolaricaulia bacterium 3121610 Bacteria Bacteria 84.3 2.1e-16   NR MFB6291067.1 3121610 g20859 i0 43 3.81388012618297 107 56 98.4 3 2 313 316 420 MFB6291067.1 FAD-dependent oxidoreductase [Candidatus Bipolaricaulia bacterium] diamond 1209 84.3 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota Candidatus Bipolaricaulia       Candidatus Bipolaricaulia bacterium
30885385 30885385 PRJNA980585_P_NODE_9414_length_433_cov_3.308333_g9160_i0 PRJNA980585 9414 433 3.308333 14.32508189 Bacillati 1783272 Bacteria Bacteria 85.5 6.37e-19   NR MCD6142244.1 2306012 g9160 i0 72.5 4.00461893764434 51 14 35.3 0 9 161 16 66 MCD6142244.1 cold-shock protein [Candidatus Bipolaricaulota bacterium] diamond 1734 85.5 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota         Candidatus Bipolaricaulota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;