RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA980585", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 10 ✖

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA980585 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10197937 10197937 PRJNA980585_P_NODE_1668_length_901_cov_16.376812_g1454_i0 PRJNA980585 1668 901 16.376812 147.55507612 Vermamoeba 1260114 Tubulinea other_Eukaryota 1493 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g1454 i0 96.559 79.7169811320755 901 31 100 0 1 901 5790 4890 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 71825 1498 0.996662216288384 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13708622 13708622 PRJNA980585_P_NODE_4691_length_580_cov_4.895464_g4437_i0 PRJNA980585 4691 580 4.895464 28.3936912 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1000 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g4437 i0 97.759 19.8137931034483 580 13 100 0 1 580 1210 1789 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11492 1000 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14983094 14983094 PRJNA980585_P_NODE_61472_length_237_cov_3.493902_g61218_i0 PRJNA980585 61472 237 3.493902 8.28054774 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 97.1 9.69e-16   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g61218 i0 87.356 31.3670886075949 87 7 37 2 1 87 4449 4367 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7434 97.1 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
16257245 16257245 PRJNA980585_P_NODE_10433_length_415_cov_14.938596_g10179_i0 PRJNA980585 10433 415 14.938596 61.9951734 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 689 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g10179 i0 96.643 36.910843373494 417 10 100 4 1 415 7104 6690 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 15318 689 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17532801 17532801 PRJNA980585_P_NODE_37554_length_258_cov_2.745946_g37300_i0 PRJNA980585 37554 258 2.745946 7.08454068 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 361 3.44e-95   NTclustered gi|909719647|gb|KT185627.1| 5778 g37300 i0 91.892 61.8527131782946 259 20 100 1 1 258 19671 19413 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 15958 361 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20081268 20081268 PRJNA980585_P_NODE_32236_length_273_cov_1.860000_g31982_i0 PRJNA980585 32236 273 1.86 5.0778 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 472 1.62e-128   NTclustered gi|259595677|gb|FJ705341.1| 675832 g31982 i0 97.802 18.3736263736264 273 6 100 0 1 273 1621 1893 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 5016 472 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
21671718 21671718 PRJNA980585_P_NODE_24137_length_300_cov_1.599119_g23883_i0 PRJNA980585 24137 300 1.599119 4.797357 Hyalospheniidae 318530 Tubulinea other_Eukaryota 128 4.51e-25   NTclustered gi|564112321|gb|KF476103.1| 318532 g23883 i0 98.611 24.4066666666667 72 1 24 0 1 72 367 438 Hyalosphenia papilio isolate HP_TN349_7.6 small subunit ribosomal RNA gene, partial sequence blastn 7322 128 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Hyalospheniidae Hyalosphenia Hyalosphenia papilio
25181401 25181401 PRJNA980585_P_NODE_8260_length_457_cov_1.187500_g8006_i0 PRJNA980585 8260 457 1.1875 5.426875 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 211 2.2e-63   NR BAN33737.1 931554 g8006 i0 71.5 13.2800875273523 144 34 89.9 1 411 1 4 147 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 6069 211 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
27405625 27405625 PRJNA980585_P_NODE_41643_length_251_cov_0.865169_g41389_i0 PRJNA980585 41643 251 0.865169 2.17157419 Amoeba proteus 5775 Tubulinea other_Eukaryota 95.5 6.41e-21   NR AAD37351.1 5775 g41389 i0 59.8 0.9800796812749 82 32 98 1 246 1 50 130 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 246 95.5 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30152284 30152284 PRJNA980585_P_NODE_22852_length_307_cov_1.264957_g22598_i0 PRJNA980585 22852 307 1.264957 3.88341799 Amoeba proteus 5775 Tubulinea other_Eukaryota 123 6.609999999999999e-31   NR AAD37351.1 5775 g22598 i0 61.8 1.84690553745928 89 34 87 0 36 302 274 362 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 567 123 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;