RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA977246", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 12 ✖

tax_phylum 1

  • Kitrinoviricota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA977246 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11154923 11154923 PRJNA977246_S_NODE_34909_length_202_cov_1.832370_g33917_i0 PRJNA977246 34909 202 1.83237 3.7013874 Potexvirus trifolii 3433859 Viruses Viruses 302 1.5800000000000001e-77   NTclustered gi|1389531330|gb|MG600296.1| 12188 g33917 i0 93.564 21.9950495049505 202 13 100 0 1 202 441 642 White clover mosaic virus isolate WCMV-PV1 putative replicase protein and putative TGB1 protein genes, complete cds; and putative TGB2 protein gene, partial cds blastn 4443 302 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
13704549 13704549 PRJNA977246_S_NODE_16271_length_356_cov_174.675841_g15280_i0 PRJNA977246 16271 356 174.675841 621.84599396 Johnsongrass virus 2845206 Viruses Viruses 569 7.519999999999996e-158   NTclustered gi|2052625483|gb|MW756210.1| 2845206 g15280 i0 100 114.457865168539 308 0 87 0 40 347 4689 4996 Johnsongrass virus isolate JVG-1 polyprotein gene, complete cds blastn 40747 569 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Endornaviridae   Johnsongrass virus
17528899 17528899 PRJNA977246_S_NODE_15294_length_372_cov_5878.282799_g14304_i0 PRJNA977246 15294 372 5878.282799 21867.21201228 Bromovirus BMV 3427622 Viruses Viruses 573 6.109999999999998e-159   NTclustered gi|1061246334|gb|KU726255.1| 12302 g14304 i0 99.06 70.8629032258064 319 3 86 0 6 324 1192 874 Brome mosaic virus segment RNA3, complete sequence blastn 26361 573 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Bromovirus Bromovirus BMV
18803048 18803048 PRJNA977246_S_NODE_30355_length_224_cov_866.307692_g29363_i0 PRJNA977246 30355 224 866.307692 1940.52923008 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.006   NTclustered gi|1995060321|gb|MN450069.1| 12164 g29363 i0 100 0.629464285714286 29 0 13 0 188 216 41 13 Carnation latent virus isolate KL, complete genome blastn 141 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
20077814 20077814 PRJNA977246_S_NODE_27956_length_239_cov_8784.242857_g26964_i0 PRJNA977246 27956 239 8784.242857 20994.34042823 Johnsongrass virus 2845206 Viruses Viruses 339 1.4699999999999999e-88   NTclustered gi|2052625483|gb|MW756210.1| 2845206 g26964 i0 98.942 73.1380753138075 189 2 79 0 51 239 1409 1597 Johnsongrass virus isolate JVG-1 polyprotein gene, complete cds blastn 17480 339 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Endornaviridae   Johnsongrass virus
25177286 25177286 PRJNA977246_S_NODE_24880_length_263_cov_4.098291_g23888_i0 PRJNA977246 24880 263 4.098291 10.77850533 Johnsongrass virus 2845206 Viruses Viruses 475 1.2e-129   NTclustered gi|2052625483|gb|MW756210.1| 2845206 g23888 i0 99.24 7.98098859315589 263 2 100 0 1 263 7598 7860 Johnsongrass virus isolate JVG-1 polyprotein gene, complete cds blastn 2099 475 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Endornaviridae   Johnsongrass virus
29520846 29520846 PRJNA977246_S_NODE_6470_length_628_cov_3.697830_g5708_i0 PRJNA977246 6470 628 3.69783 23.2223724 Erysiphe necator associated flexivirus 2 2743099 Viruses Viruses 380 2.6e-118   NR QKN22646.1 2743099 g5708 i0 87 0.993630573248408 208 27 99.4 0 4 627 1703 1910 QKN22646.1 RNA-dependent RNA polymerase [Erysiphe necator associated flexivirus 2] diamond 624 380 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales     Erysiphe necator associated flexivirus 2
30184093 30184093 PRJNA977246_S_NODE_5932_length_659_cov_278.347619_g5210_i0 PRJNA977246 5932 659 278.347619 1834.31080921 Erysiphe necator associated virga-like virus 6 2743133 Viruses Viruses 167 1.6799999999999996e-43   NR QKN22665.1 2743133 g5210 i0 57.4 0.641881638846737 141 59 63.7 1 34 453 1004 1144 QKN22665.1 RNA-dependent RNA polymerase [Erysiphe necator associated virga-like virus 6] diamond 423 167 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae   Erysiphe necator associated virga-like virus 6
31827575 31827575 PRJNA977246_S_NODE_1437_length_1579_cov_12.667097_g1250_i0 PRJNA977246 1437 1579 12.667097 200.01346163 Grapevine wood holobiome associated deltaflexivirus 2 3384488 Viruses Viruses 56.2 5.08e-5   NR XLE34830.1 3384488 g1250 i0 29.8 0.267891070297657 141 90 26 2 518 928 62 197 XLE34830.1 hypothetical protein [Grapevine wood holobiome associated deltaflexivirus 2] diamond 423 56.2 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Deltaflexiviridae Deltaflexivirus Grapevine wood holobiome associated deltaflexivirus 2
32087063 32087063 PRJNA977246_S_NODE_49878_length_154_cov_2.640000_g48886_i0 PRJNA977246 49878 154 2.64 4.0656 Tobamovirus 12234 Viruses Viruses 58.9 2.17e-8   NR QED22727.1 2601607 g48886 i0 53.1 3.72077922077922 49 23 95.5 0 1 147 1052 1100 QED22727.1 RNA-dependent RNA polymerase [Botryosphaeria dothidea tobamo-like virus] diamond 573 58.9 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae   Botryosphaeria dothidea tobamo-like virus
32460686 32460686 PRJNA977246_S_NODE_15139_length_375_cov_8.401734_g14149_i0 PRJNA977246 15139 375 8.401734 31.5065025 Erysiphe necator associated flexivirus 2 2743099 Viruses Viruses 129 8.25e-32   NR QKN22646.1 2743099 g14149 i0 82.7 0.6 75 13 60 0 1 225 1902 1976 QKN22646.1 RNA-dependent RNA polymerase [Erysiphe necator associated flexivirus 2] diamond 225 129 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales     Erysiphe necator associated flexivirus 2
32649666 32649666 PRJNA977246_S_NODE_43300_length_171_cov_2.147887_g42308_i0 PRJNA977246 43300 171 2.147887 3.67288677 Erysiphe necator associated flexivirus 2 2743099 Viruses Viruses 53.1 2.97e-6   NR QKN22646.1 2743099 g42308 i0 89.7 0.508771929824561 29 3 50.9 0 81 167 1677 1705 QKN22646.1 RNA-dependent RNA polymerase [Erysiphe necator associated flexivirus 2] diamond 87 53.1 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales     Erysiphe necator associated flexivirus 2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;