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contig_metadata

34 rows where bioproject = "PRJNA977246", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 34 ✖

tax_phylum 1

  • Acidobacteriota · 34 ✖

tax_kingdom 1

bioproject 1

  • PRJNA977246 · 34 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3502101 3502101 PRJNA977246_S_NODE_37643_length_190_cov_3.397516_g36651_i0 PRJNA977246 37643 190 3.397516 6.4552804 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 329 6.730000000000001e-86   NTclustered gi|2874254091|emb|OY970174.1| 171953 g36651 i0 97.895 93.9052631578947 190 4 100 0 1 190 4356769 4356958 MAG: uncultured Acidobacteriota bacterium isolate MFD01275.bin.c.18 genome assembly, chromosome: 1 blastn 17842 329 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
6054757 6054757 PRJNA977246_S_NODE_35605_length_198_cov_5514.224852_g34613_i0 PRJNA977246 35605 198 5514.224852 10918.16520696 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 200 5.79e-47   NTclustered gi|217038890|gb|EU810980.1| 171953 g34613 i0 89.375 4.80808080808081 160 15 80 2 41 198 78 237 Uncultured Acidobacteria bacterium clone H11-00YKB 23S ribosomal RNA gene, partial sequence blastn 952 200 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
8603791 8603791 PRJNA977246_S_NODE_14667_length_383_cov_2610.949153_g13678_i0 PRJNA977246 14667 383 2610.949153 9999.93525599 Acidobacteriota bacterium 1978231 Bacteria Bacteria 363 1.49e-95   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g13678 i0 85.756 163.362924281984 344 48 90 1 41 383 3298163 3298506 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 62568 363 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
8604126 8604126 PRJNA977246_S_NODE_25327_length_259_cov_3.586957_g24335_i0 PRJNA977246 25327 259 3.586957 9.29021863 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 263 1e-65   NTclustered gi|112980849|gb|DQ829653.1| 171953 g24335 i0 85.227 133.474903474903 264 29 100 7 1 259 949 691 Uncultured Acidobacteria bacterium clone DON8 23S ribosomal RNA gene, partial sequence blastn 34570 263 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
8921957 8921957 PRJNA977246_S_NODE_4907_length_734_cov_358.561702_g4288_i0 PRJNA977246 4907 734 358.561702 2631.84289268 Acidobacteriota bacterium 1978231 Bacteria Bacteria 166 1.08e-42   NR MDQ3214113.1 1978231 g4288 i0 40.7 0.964577656675749 236 129 93.6 4 724 38 270 501 MDQ3214113.1 Ig-like domain repeat protein [Acidobacteriota bacterium] diamond 708 166 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
11155156 11155156 PRJNA977246_S_NODE_46449_length_162_cov_3.368421_g45457_i0 PRJNA977246 46449 162 3.368421 5.45684202 Acidobacteriota bacterium 1978231 Bacteria Bacteria 84 1.8e-17   NR MEK6280361.1 1978231 g45457 i0 75.6 0.833333333333333 45 11 83.3 0 20 154 36 80 MEK6280361.1 hypothetical protein [Acidobacteriota bacterium] diamond 135 84 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
16254279 16254279 PRJNA977246_S_NODE_34153_length_205_cov_3.215909_g33161_i0 PRJNA977246 34153 205 3.215909 6.59261345 Edaphobacter paludis 3035702 Bacteria Bacteria 379 7.229999999999999e-101   NTclustered gi|2737763816|gb|CP121194.1| 3035702 g33161 i0 100 35.219512195122 205 0 100 0 1 205 662436 662640 Edaphobacter paludis strain DSM 109919 chromosome, complete genome blastn 7220 379 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Edaphobacter Edaphobacter paludis
17528985 17528985 PRJNA977246_S_NODE_18254_length_330_cov_3.511628_g17262_i0 PRJNA977246 18254 330 3.511628 11.5883724 Bacteria 2 Bacteria Bacteria 171 1.8700000000000002e-49   NR MCC7180033.1 1978231 g17262 i0 79.1 3 110 23 100 0 1 330 212 321 MCC7180033.1 cysteine desulfurase [Acidobacteriota bacterium] diamond 990 171 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
20395118 20395118 PRJNA977246_S_NODE_15716_length_365_cov_5450.809524_g14726_i0 PRJNA977246 15716 365 5450.809524 19895.4547626 Granulicella 940557 Bacteria Bacteria 129 7.169999999999999e-32   NR WP_317890972.1 940613 g14726 i0 80.2 1.24931506849315 81 15 66.6 1 20 262 215 294 WP_317890972.1 YjhG/YagF family D-xylonate dehydratase [Granulicella arctica] diamond 456 129 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella Granulicella arctica
21352967 21352967 PRJNA977246_S_NODE_15377_length_371_cov_4.511696_g14387_i0 PRJNA977246 15377 371 4.511696 16.73839216 Luteitalea sp. TBR-22 2802971 Bacteria Bacteria 211 5.5e-50   NTclustered gi|2131947417|dbj|AP024452.2| 2802971 g14387 i0 78.916 57.9056603773585 332 55 89 13 22 350 4536685 4537004 Vicinamibacteria bacterium TBR-22 DNA, complete genome blastn 21483 211 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea sp. TBR-22
22628935 22628935 PRJNA977246_S_NODE_7418_length_577_cov_5189.538321_g6609_i0 PRJNA977246 7418 577 5189.538321 29943.63611217 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 758 0   NTclustered gi|1015624362|gb|AH012920.2| 171953 g6609 i0 94.705 75.9878682842288 491 21 85 4 41 529 31681 31194 Uncultured Acidobacteria bacterium clone 46h5 hypothetical protein, putative O-linked GlcNAc transferase, putative two-component response regulator, hypothetical protein, putative penicillin-resistance DD-carboxypeptidase, putative glycosyl transferase, hypothetical protein, conserved hypothetical protein, hypothetical protein, putative MaoC family dehydratase, putative D-3-phosphoglycerate dehydrogenase, putative magnesium and cobalt transport protein, putative phosphatidyl-glycerophosphatase, putative 2-methylthioadenine synthetase, hypothetical protein, putative glutamine cyclotransferase, and hypothetical protein genes, complete cds; 5S ribosomal RNA, 23S ribosomal RNA, tRNA-Ala, tRNA-Met, tRNA-Ile, and 16S ribosomal RNA genes, complete sequence; and hypothetical protein genes, complete cds blastn 43845 758 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
24220489 24220489 PRJNA977246_S_NODE_25519_length_257_cov_7989.561404_g24527_i0 PRJNA977246 25519 257 7989.561404 20533.17280828 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 61.6 7.08e-10   NR MFL6280472.1 2910147 g24527 i0 77.5 1.42412451361868 40 9 46.7 0 208 89 78 117 MFL6280472.1 STAS/SEC14 domain-containing protein [Vicinamibacterales bacterium] diamond 366 61.6 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
25178017 25178017 PRJNA977246_S_NODE_9760_length_491_cov_4159.452381_g8846_i0 PRJNA977246 9760 491 4159.452381 20422.91119071 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 584 3.8199999999999983e-162   NTclustered gi|1015624362|gb|AH012920.2| 171953 g8846 i0 90.625 75.5213849287169 448 31 90 10 49 491 31194 31635 Uncultured Acidobacteria bacterium clone 46h5 hypothetical protein, putative O-linked GlcNAc transferase, putative two-component response regulator, hypothetical protein, putative penicillin-resistance DD-carboxypeptidase, putative glycosyl transferase, hypothetical protein, conserved hypothetical protein, hypothetical protein, putative MaoC family dehydratase, putative D-3-phosphoglycerate dehydrogenase, putative magnesium and cobalt transport protein, putative phosphatidyl-glycerophosphatase, putative 2-methylthioadenine synthetase, hypothetical protein, putative glutamine cyclotransferase, and hypothetical protein genes, complete cds; 5S ribosomal RNA, 23S ribosomal RNA, tRNA-Ala, tRNA-Met, tRNA-Ile, and 16S ribosomal RNA genes, complete sequence; and hypothetical protein genes, complete cds blastn 37081 584 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
26899665 26899665 PRJNA977246_S_NODE_51321_length_151_cov_2.327869_g50329_i0 PRJNA977246 51321 151 2.327869 3.51508219 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 80.5 7.97e-17   NR HYO79788.1 2212468 g50329 i0 83 0.933774834437086 47 8 93.4 0 10 150 28 74 HYO79788.1 hypothetical protein [Bryobacteraceae bacterium] diamond 141 80.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
27310845 27310845 PRJNA977246_S_NODE_35203_length_200_cov_4.286550_g34211_i0 PRJNA977246 35203 200 4.28655 8.5731 uncultured Pyrinomonadaceae bacterium 2283094 Bacteria Bacteria 100 5.5e-24   NR CAA9388759.1 2283094 g34211 i0 84.5 0.87 58 9 87 0 174 1 207 264 CAA9388759.1 MAG: Short-chain dehydrogenase/reductase SDR? [uncultured Pyrinomonadaceae bacterium] diamond 174 100 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   uncultured Pyrinomonadaceae bacterium
27973728 27973728 PRJNA977246_S_NODE_14205_length_391_cov_4.649171_g13220_i0 PRJNA977246 14205 391 4.649171 18.17825861 Terracidiphilus sp. 1964191 Bacteria Bacteria 110 2.4800000000000003e-27   NR HWA94887.1 1964191 g13220 i0 47.9 1.81841432225064 117 61 89.8 0 21 371 103 219 HWA94887.1 TetR/AcrR family transcriptional regulator [Terracidiphilus sp.] diamond 711 110 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terracidiphilus Terracidiphilus sp.
28068419 28068419 PRJNA977246_S_NODE_26645_length_249_cov_4.213636_g25653_i0 PRJNA977246 26645 249 4.213636 10.49195364 Acidobacteriota bacterium 1978231 Bacteria Bacteria 56.2 6.47e-7   NR MEP0774906.1 1978231 g25653 i0 72.5 0.481927710843373 40 11 48.2 0 63 182 130 169 MEP0774906.1 UPF0236 family protein [Acidobacteriota bacterium] diamond 120 56.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28637008 28637008 PRJNA977246_S_NODE_14267_length_390_cov_4.526316_g13281_i0 PRJNA977246 14267 390 4.526316 17.6526324 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 94 7.07e-20   NR MCM3879371.1 2910147 g13281 i0 65.1 1.36923076923077 86 26 66.2 2 264 7 10 91 MCM3879371.1 hypothetical protein [Vicinamibacterales bacterium] diamond 534 94 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
28794470 28794470 PRJNA977246_S_NODE_44727_length_167_cov_1.855072_g43735_i0 PRJNA977246 44727 167 1.855072 3.09797024 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 63.5 5.92e-10   NR HLY16477.1 2212468 g43735 i0 55.8 2.7125748502994 52 23 93.4 0 166 11 58 109 HLY16477.1 glycosyltransferase family 4 protein [Bryobacteraceae bacterium] diamond 453 63.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29047361 29047361 PRJNA977246_S_NODE_33108_length_210_cov_2.530387_g32116_i0 PRJNA977246 33108 210 2.530387 5.3138127 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 82.8 8.08e-17   NR HYO81688.1 2212468 g32116 i0 76.5 0.728571428571429 51 12 72.9 0 56 208 200 250 HYO81688.1 hypothetical protein [Bryobacteraceae bacterium] diamond 153 82.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29709933 29709933 PRJNA977246_S_NODE_18930_length_322_cov_3.320819_g17938_i0 PRJNA977246 18930 322 3.320819 10.69303718 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 47 0.00296   NR HUQ90326.1 2212468 g17938 i0 35.2 2.92546583850932 105 61 94.1 4 20 322 276 377 HUQ90326.1 phage/plasmid primase, P4 family [Bryobacteraceae bacterium] diamond 942 47 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29741609 29741609 PRJNA977246_S_NODE_37750_length_190_cov_2.229814_g36758_i0 PRJNA977246 37750 190 2.229814 4.2366466 Acidobacteriota bacterium 1978231 Bacteria Bacteria 115 4.32e-28   NR MBI2150612.1 1978231 g36758 i0 87.3 0.994736842105263 63 6 96.3 1 8 190 527 589 MBI2150612.1 pyrroloquinoline quinone-dependent dehydrogenase [Acidobacteriota bacterium] diamond 189 115 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30374114 30374114 PRJNA977246_S_NODE_42972_length_172_cov_1.902098_g41980_i0 PRJNA977246 42972 172 1.902098 3.27160856 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 77 1.19e-14   NR HEX4966361.1 2651171 g41980 i0 68.4 1.97093023255814 57 18 99.4 0 171 1 195 251 HEX4966361.1 Ig-like domain-containing protein [Thermoanaerobaculia bacterium] diamond 339 77 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
30531585 30531585 PRJNA977246_S_NODE_27093_length_246_cov_3.004608_g26101_i0 PRJNA977246 27093 246 3.004608 7.39133568 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 151 5.18e-44   NR HYO79788.1 2212468 g26101 i0 77.8 0.98780487804878 81 18 98.8 0 245 3 136 216 HYO79788.1 hypothetical protein [Bryobacteraceae bacterium] diamond 243 151 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
31005613 31005613 PRJNA977246_S_NODE_29574_length_229_cov_3.610000_g28582_i0 PRJNA977246 29574 229 3.61 8.2669 Acidobacteriota bacterium 1978231 Bacteria Bacteria 45.1 0.00477   NR MEM8933937.1 1978231 g28582 i0 37.5 2.80349344978166 72 45 94.3 0 1 216 442 513 MEM8933937.1 tetratricopeptide repeat protein [Acidobacteriota bacterium] diamond 642 45.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31137848 31137848 PRJNA977246_S_NODE_9455_length_501_cov_2.870763_g8550_i0 PRJNA977246 9455 501 2.870763 14.38252263 Bacteria 2 Bacteria Bacteria 258 5.6e-84   NR MBI2835607.1 1978231 g8550 i0 72.6 20.2934131736527 168 40 99.4 3 498 1 44 207 MBI2835607.1 hypothetical protein [Acidobacteriota bacterium] diamond 10167 260 0.992307692307692 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31258415 31258415 PRJNA977246_S_NODE_33315_length_209_cov_2.844444_g32323_i0 PRJNA977246 33315 209 2.844444 5.94488796 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 86.7 7.91e-18   NR HEX7797361.1 2910147 g32323 i0 73.9 0.990430622009569 69 13 99 2 208 2 354 417 HEX7797361.1 flagellar basal-body MS-ring/collar protein FliF [Vicinamibacterales bacterium] diamond 207 86.7 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
31391231 31391231 PRJNA977246_S_NODE_39456_length_183_cov_4.175325_g38464_i0 PRJNA977246 39456 183 4.175325 7.64084475 Acidobacteriota 57723 Bacteria Bacteria 65.9 1.12e-10   NR WP_041856917.1 658062 g38464 i0 54.4 7.22950819672131 57 24 93.4 1 173 3 372 426 WP_041856917.1 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus Korobacter versatilis] diamond 1323 65.9 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Candidatus Korobacteraceae Candidatus Korobacter Candidatus Korobacter versatilis
31454454 31454454 PRJNA977246_S_NODE_40156_length_181_cov_2.513158_g39164_i0 PRJNA977246 40156 181 2.513158 4.54881598 Bacteria 2 Bacteria Bacteria 64.7 2.82e-10   NR MCA1602594.1 1978231 g39164 i0 46.6 6.69613259668508 58 31 96.1 0 179 6 580 637 MCA1602594.1 protein kinase [Acidobacteriota bacterium] diamond 1212 64.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31480112 31480112 PRJNA977246_S_NODE_43276_length_171_cov_2.352113_g42284_i0 PRJNA977246 43276 171 2.352113 4.02211323 Acidobacteriota bacterium 1978231 Bacteria Bacteria 85.5 1.24e-17   NR MDQ2921341.1 1978231 g42284 i0 81.6 0.859649122807018 49 9 86 0 1 147 541 589 MDQ2921341.1 YCF48-related protein [Acidobacteriota bacterium] diamond 147 85.5 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31890983 31890983 PRJNA977246_S_NODE_19217_length_318_cov_3165.273356_g18225_i0 PRJNA977246 19217 318 3165.273356 10065.56927208 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 66.2 2.47e-10   NR HWN84278.1 2910147 g18225 i0 88.9 0.339622641509434 36 4 34 0 196 89 1 36 HWN84278.1 creatininase family protein [Vicinamibacterales bacterium] diamond 108 66.2 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
32112575 32112575 PRJNA977246_S_NODE_12658_length_421_cov_3.181122_g11687_i0 PRJNA977246 12658 421 3.181122 13.39252362 Geothrix sp. 1962974 Bacteria Bacteria 127 1.4e-32   NR MDP1830588.1 1962974 g11687 i0 88.6 1.99524940617577 70 8 49.9 0 7 216 255 324 MDP1830588.1 phosphate ABC transporter substrate-binding protein [Geothrix sp.] diamond 840 127 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp.
32460691 32460691 PRJNA977246_S_NODE_29099_length_232_cov_3.630542_g28107_i0 PRJNA977246 29099 232 3.630542 8.42285744 Terriglobia bacterium 2081523 Bacteria Bacteria 102 2.0299999999999998e-23   NR HYR45037.1 2081523 g28107 i0 63.2 0.982758620689655 76 28 98.3 0 3 230 4 79 HYR45037.1 AAA family ATPase [Terriglobia bacterium] diamond 228 102 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium
32744601 32744601 PRJNA977246_S_NODE_4600_length_764_cov_4.129252_g4008_i0 PRJNA977246 4600 764 4.129252 31.54748528 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 231 8.359999999999998e-69   NR HEX3231412.1 2283092 g4008 i0 88.4 0.541884816753927 138 16 54.2 0 740 327 414 551 HEX3231412.1 CSLREA domain-containing protein [Pyrinomonadaceae bacterium] diamond 414 231 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;