RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA977246", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 9 ✖

tax_kingdom 1

  • Pseudomonadati · 9 ✖

bioproject 1

  • PRJNA977246 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25177959 25177959 PRJNA977246_S_NODE_8060_length_550_cov_7.299424_g7219_i0 PRJNA977246 8060 550 7.299424 40.146832 Dissulfurispira thermophila 2715679 Bacteria Bacteria 701 0   NTclustered gi|1901208073|dbj|AP022873.1| 2715679 g7219 i0 90.548 0.961818181818182 529 50 96 0 4 532 373812 373284 Dissulfurispira thermophila T55J DNA, complete genome blastn 529 701 1 Bacteria   Pseudomonadati Nitrospirota Thermodesulfovibrionia Thermodesulfovibrionales Dissulfurispiraceae Dissulfurispira Dissulfurispira thermophila
26772956 26772956 PRJNA977246_S_NODE_45401_length_165_cov_2.389706_g44409_i0 PRJNA977246 45401 165 2.389706 3.9430149 Nitrospira sp. 70125 Bacteria Bacteria 42 0.0255   NR UVT15741.1 70125 g44409 i0 42.9 0.890909090909091 49 28 89.1 0 13 159 12 60 UVT15741.1 MAG: RHS repeat protein [Nitrospira sp.] diamond 147 42 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
27247379 27247379 PRJNA977246_S_NODE_49803_length_154_cov_3.208000_g48811_i0 PRJNA977246 49803 154 3.208 4.94032 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 80.1 7.43e-16   NR MFQ5931369.1 2026770 g48811 i0 80 1.94805194805195 50 9 97.4 1 153 4 184 232 MFQ5931369.1 Hsp70 family protein [Nitrospiraceae bacterium] diamond 300 80.1 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
28542283 28542283 PRJNA977246_S_NODE_19507_length_315_cov_3.828671_g18515_i0 PRJNA977246 19507 315 3.828671 12.06031365 Nitrospirales bacterium 2358460 Bacteria Bacteria 106 5.61e-25   NR MEX2490135.1 2358460 g18515 i0 53.8 1.66666666666667 93 43 88.6 0 23 301 72 164 MEX2490135.1 hypothetical protein [Nitrospirales bacterium] diamond 525 106 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales     Nitrospirales bacterium
30784421 30784421 PRJNA977246_S_NODE_23734_length_273_cov_2.696721_g22742_i0 PRJNA977246 23734 273 2.696721 7.36204833 Nitrospira sp. 70125 Bacteria Bacteria 171 3.4e-50   NR HEX5549688.1 70125 g22742 i0 95.6 0.989010989010989 90 4 98.9 0 271 2 65 154 HEX5549688.1 Gfo/Idh/MocA family oxidoreductase [Nitrospira sp.] diamond 270 171 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
31194771 31194771 PRJNA977246_S_NODE_30955_length_221_cov_3.296875_g29963_i0 PRJNA977246 30955 221 3.296875 7.28609375 Thermodesulfovibrio sp. 1176 3043424 Bacteria Bacteria 51.6 2.11e-5   NR WP_281320892.1 3043424 g29963 i0 41.5 1.35746606334842 53 31 71.9 0 61 219 374 426 WP_281320892.1 ribonucleoside triphosphate reductase [Thermodesulfovibrio sp. 1176] diamond 300 51.6 1 Bacteria   Pseudomonadati Nitrospirota Thermodesulfovibrionia Thermodesulfovibrionales Thermodesulfovibrionaceae Thermodesulfovibrio Thermodesulfovibrio sp. 1176
31226646 31226646 PRJNA977246_S_NODE_51835_length_150_cov_2.066116_g50843_i0 PRJNA977246 51835 150 2.066116 3.099174 Nitrospirota bacterium 2026887 Bacteria Bacteria 68.6 5.45e-12   NR MEK7301034.1 2026887 g50843 i0 91.4 0.7 35 3 70 0 128 24 270 304 MEK7301034.1 NAD(P)/FAD-dependent oxidoreductase [Nitrospirota bacterium] diamond 105 68.6 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
32087058 32087058 PRJNA977246_S_NODE_18658_length_325_cov_2.976351_g17666_i0 PRJNA977246 18658 325 2.976351 9.67314075 Pseudomonadati 3379134 Bacteria Bacteria 176 2.38e-51   NR MCS6896487.1 70125 g17666 i0 80.2 2.79692307692308 101 20 93.2 0 11 313 242 342 MCS6896487.1 hypothetical protein [Nitrospira sp.] diamond 909 177 0.994350282485876 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
32838815 32838815 PRJNA977246_S_NODE_17140_length_344_cov_3.320635_g16148_i0 PRJNA977246 17140 344 3.320635 11.4229844 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 174 4.309999999999999e-52   NR MBX9659592.1 2026770 g16148 i0 98.9 0.784883720930233 90 1 78.5 0 271 2 100 189 MBX9659592.1 hypothetical protein [Nitrospiraceae bacterium] diamond 270 174 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;