RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

28 rows where bioproject = "PRJNA977246", tax_clade = "Sar" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 28 ✖

tax_clade 1

  • Sar · 28 ✖

bioproject 1

  • PRJNA977246 · 28 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1268817 1268817 PRJNA977246_S_NODE_25661_length_256_cov_43.475771_g24669_i0 PRJNA977246 25661 256 43.475771 111.29797376 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 436 5.5e-118   NTclustered gi|440919553|gb|JX436353.1| 1279233 g24669 i0 97.287 100.8046875 258 5 100 1 1 256 287 30 Myzocytiopsis sp. GPR-2013 28S ribosomal RNA gene, partial sequence blastn 25806 436 1 Eukaryota Sar   Oomycota   Myzocytiopsidales Myzocytiopsidaceae Myzocytiopsis Myzocytiopsis sp. GPR-2013
2226826 2226826 PRJNA977246_S_NODE_36702_length_194_cov_2.739394_g35710_i0 PRJNA977246 36702 194 2.739394 5.31442436 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 193 9.46e-45   NTclustered gi|695385974|ref|XM_009520132.1| 67593 g35710 i0 85.34 15.6701030927835 191 23 97 5 6 194 318 131 Phytophthora sojae hypothetical protein mRNA blastn 3040 193 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
2544550 2544550 PRJNA977246_S_NODE_28862_length_233_cov_16.529412_g27870_i0 PRJNA977246 28862 233 16.529412 38.51352996 Peronosporales 4776 SAR_Eukaryotes SAR_Eukaryotes 407 3.86e-109   NTclustered gi|324983146|gb|HQ161084.1| 4786 g27870 i0 99.115 97 226 2 97 0 1 226 800 575 Phytophthora cryptogea strain P10456 18S ribosomal RNA gene, partial sequence blastn 22601 407 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cryptogea
4779451 4779451 PRJNA977246_S_NODE_27944_length_239_cov_9594.890476_g26952_i0 PRJNA977246 27944 239 9594.890476 22931.78823764 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 117 7.51e-22   NTclustered gi|325194231|emb|FR825088.1| 890382 g26952 i0 80 69.092050209205 165 27 67 5 29 189 730 568 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 16513 117 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
5097382 5097382 PRJNA977246_S_NODE_48384_length_157_cov_18.945312_g47392_i0 PRJNA977246 48384 157 18.945312 29.74413984 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 283 4.22e-72   NTclustered gi|1663822467|gb|MH730839.1| 120572 g47392 i0 99.359 96.515923566879 156 1 99 0 2 157 300 145 Peronospora bulbocapni voucher GLM64102 28S ribosomal RNA gene, partial sequence blastn 15153 283 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora bulbocapni
6054969 6054969 PRJNA977246_S_NODE_45745_length_164_cov_2.748148_g44753_i0 PRJNA977246 45745 164 2.748148 4.50696272 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 252 1.26e-62   NTclustered gi|325194231|emb|FR825088.1| 890382 g44753 i0 94.512 1 164 8 100 1 1 164 1058 1220 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 164 252 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
7647006 7647006 PRJNA977246_S_NODE_37326_length_191_cov_264.567901_g36334_i0 PRJNA977246 37326 191 264.567901 505.32469091 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 342 8.699999999999999e-90   NTclustered gi|189084007|gb|BT031523.1| 4784 g36334 i0 100 96.7486910994764 185 0 97 0 7 191 1903 2087 Phytophthora capsici clone CBOT29-E20 mRNA sequence blastn 18479 342 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
7647068 7647068 PRJNA977246_S_NODE_44846_length_166_cov_4.737226_g43854_i0 PRJNA977246 44846 166 4.737226 7.86379516 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 307 2.69e-79   NTclustered gi|1238675774|gb|MF783088.1| 4784 g43854 i0 100 100 166 0 100 0 1 166 772 937 Phytophthora capsici isolate CACAO small subunit ribosomal RNA gene, partial sequence blastn 16600 307 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
11154769 11154769 PRJNA977246_S_NODE_28789_length_234_cov_2.780488_g27797_i0 PRJNA977246 28789 234 2.780488 6.50634192 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 145 3.36e-30   NTclustered gi|695395016|ref|XM_009522761.1| 67593 g27797 i0 81.081 0.790598290598291 185 31 78 4 42 223 1806 1623 Phytophthora sojae hypothetical protein partial mRNA blastn 185 145 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
11155273 11155273 PRJNA977246_S_NODE_6229_length_641_cov_4.212418_g5482_i0 PRJNA977246 6229 641 4.212418 27.00159938 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 193 4.38e-59   NR RHY03263.1 112090 g5482 i0 59.6 2.1201248049922 151 61 70.7 0 34 486 22 172 RHY03263.1 hypothetical protein DYB36_008331, partial [Aphanomyces astaci] diamond 1359 193 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
11472571 11472571 PRJNA977246_S_NODE_17469_length_339_cov_56.741935_g16477_i0 PRJNA977246 17469 339 56.741935 192.35515965 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 588 1.97e-163   NTclustered gi|1663822451|gb|MH730823.1| 162094 g16477 i0 97.935 100.005899705015 339 7 100 0 1 339 470 808 Peronospora hiemalis voucher GLM75690 28S ribosomal RNA gene, partial sequence blastn 33902 593 0.991568296795953 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora hiemalis
11472663 11472663 PRJNA977246_S_NODE_26309_length_251_cov_85.112613_g25317_i0 PRJNA977246 26309 251 85.112613 213.63265863 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 436 5.369999999999999e-118   NTclustered gi|2703611740|gb|PP531597.1| 162098 g25317 i0 98.008 99.996015936255 251 5 100 0 1 251 1052 802 Peronospora myosotidis voucher GLM-F73872 large subunit ribosomal RNA gene, partial sequence blastn 25099 436 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora myosotidis
12431153 12431153 PRJNA977246_S_NODE_9750_length_492_cov_4.587473_g8836_i0 PRJNA977246 9750 492 4.587473 22.57036716 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 296 2.01e-75   NTclustered gi|2795022084|ref|XM_067941291.1| 4785 g8836 i0 91.244 3.10975609756098 217 19 44 0 276 492 258 42 Phytophthora cinnamomi 40S ribosomal protein S30 (IUM83_16413), partial mRNA blastn 1530 296 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
12748226 12748226 PRJNA977246_S_NODE_46270_length_163_cov_1.641791_g45278_i0 PRJNA977246 46270 163 1.641791 2.67611933 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 117 1.74e-29   NR XP_024574992.1 4781 g45278 i0 100 51.680981595092 54 0 99.4 0 163 2 172 225 XP_024574992.1 ck1 ck1 ck1-d protein kinase [Plasmopara halstedii] diamond 8424 117 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
12748267 12748267 PRJNA977246_S_NODE_5430_length_692_cov_7.174962_g4754_i0 PRJNA977246 5430 692 7.174962 49.65073704 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 1048 0   NTclustered gi|1233046530|gb|KX250444.1| 67592 g4754 i0 93.966 100.553468208092 696 37 100 4 1 692 275 969 Phytophthora iranica isolate 61J4(ex-type) 28S ribosomal RNA gene, partial sequence blastn 69583 1048 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora iranica
13704863 13704863 PRJNA977246_S_NODE_28191_length_238_cov_3.052632_g27199_i0 PRJNA977246 28191 238 3.052632 7.26526416 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 165 2.63e-36   NTclustered gi|695391971|ref|XM_009521898.1| 67593 g27199 i0 85.185 1.36974789915966 162 22 68 2 78 238 3067 2907 Phytophthora sojae hypothetical protein partial mRNA blastn 326 165 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
13705249 13705249 PRJNA977246_S_NODE_45971_length_163_cov_6.119403_g44979_i0 PRJNA977246 45971 163 6.119403 9.97462689 Phytophthora megasperma 4788 SAR_Eukaryotes SAR_Eukaryotes 285 1.23e-72   NTclustered gi|2440150|emb|X75631.1| 4788 g44979 i0 100 91.5398773006135 154 0 94 0 1 154 2715 2868 P.megasperma gene for 28S ribosomal RNA blastn 14921 285 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
14979017 14979017 PRJNA977246_S_NODE_23952_length_271_cov_2.842975_g22960_i0 PRJNA977246 23952 271 2.842975 7.70446225 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 200 8.39e-47   NTclustered gi|325194231|emb|FR825088.1| 890382 g22960 i0 93.382 0.623616236162362 136 8 50 1 134 269 935 1069 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 169 200 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
14979155 14979155 PRJNA977246_S_NODE_29032_length_232_cov_60.492611_g28040_i0 PRJNA977246 29032 232 60.492611 140.34285752 Peronospora verna 240418 SAR_Eukaryotes SAR_Eukaryotes 429 8.2e-116   NTclustered gi|33520218|gb|AY273963.1| 240418 g28040 i0 100 100.068965517241 232 0 100 0 1 232 441 672 Peronospora verna large subunit ribosomal RNA gene, partial sequence blastn 23216 429 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora verna
17529654 17529654 PRJNA977246_S_NODE_46654_length_162_cov_1.488722_g45662_i0 PRJNA977246 46654 162 1.488722 2.41172964 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 257 2.66e-64   NTclustered gi|325194231|emb|FR825088.1| 890382 g45662 i0 96.774 2.1358024691358 155 3 96 1 1 155 1335 1487 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 346 257 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
18802800 18802800 PRJNA977246_S_NODE_20975_length_298_cov_10169.765799_g19983_i0 PRJNA977246 20975 298 10169.765799 30305.90208102 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 448 3.0199999999999996e-121   NTclustered gi|325194239|emb|FR825095.1| 890382 g19983 i0 97.701 88.6510067114094 261 5 88 1 38 298 890 1149 Albugo laibachii Nc14, genomic contig CONTIG_1625_NC14_v4_1818_619 blastn 26418 448 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
21671390 21671390 PRJNA977246_S_NODE_40557_length_179_cov_39.066667_g39565_i0 PRJNA977246 40557 179 39.066667 69.92933393 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 313 6.3e-81   NTclustered gi|33520248|gb|AY273993.1| 100870 g39565 i0 98.315 98.9106145251397 178 3 99 0 1 178 210 33 Peronophythora litchii large subunit ribosomal RNA gene, partial sequence blastn 17705 316 0.990506329113924 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora litchii
22628728 22628728 PRJNA977246_S_NODE_44358_length_168_cov_1.705036_g43366_i0 PRJNA977246 44358 168 1.705036 2.86446048 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 135 1.3600000000000002e-27   NTclustered gi|2794892013|ref|XM_067887247.1| 164328 g43366 i0 81.595 0.970238095238095 163 30 97 0 5 167 100 262 Phytophthora ramorum uncharacterized protein (KRP23_2502), partial mRNA blastn 163 135 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
23903502 23903502 PRJNA977246_S_NODE_17879_length_334_cov_417.603279_g16887_i0 PRJNA977246 17879 334 417.603279 1394.79495186 Peronospora cf. viciae 2028485 SAR_Eukaryotes SAR_Eukaryotes 525 1.5399999999999994e-144   NTclustered gi|1235732002|gb|MF693905.1| 2028485 g16887 i0 95.21 99.9910179640719 334 13 100 1 1 334 340 10 Peronospora cf. viciae isolate RC16DM4 large subunit ribosomal RNA gene, partial sequence blastn 33397 525 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora cf. viciae
23903873 23903873 PRJNA977246_S_NODE_31259_length_219_cov_4.668421_g30267_i0 PRJNA977246 31259 219 4.668421 10.22384199 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 359 1.0199999999999999e-94   NTclustered gi|937408816|ref|NC_027966.1| 114742 g30267 i0 97.608 99.2602739726027 209 5 95 0 10 218 10887 10679 Pythium insidiosum mitochondrial DNA, complete genome blastn 21738 359 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
29047353 29047353 PRJNA977246_S_NODE_16508_length_353_cov_3.734568_g15517_i0 PRJNA977246 16508 353 3.734568 13.18302504 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 79.7 1.97e-15   NR GLD97161.1 114742 g15517 i0 45.8 1.86118980169972 107 51 90.9 4 22 342 112 211 GLD97161.1 hypothetical protein PINS_up005844 [Pythium insidiosum] diamond 657 79.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
29425935 29425935 PRJNA977246_S_NODE_35449_length_199_cov_4.200000_g34457_i0 PRJNA977246 35449 199 4.2 8.358 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 62.4 2.45e-9   NR KAJ0402321.1 114742 g34457 i0 57.7 0.78391959798995 52 19 73.9 2 189 43 160 211 KAJ0402321.1 hypothetical protein P43SY_008562 [Pythium insidiosum] diamond 156 62.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
31137847 31137847 PRJNA977246_S_NODE_5675_length_676_cov_28.777434_g4975_i0 PRJNA977246 5675 676 28.777434 194.53545384 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 128 6.5e-34   NR DAZ93102.1 4803 g4975 i0 54.3 5.27218934911243 127 57 56.4 1 60 440 4 129 DAZ93102.1 TPA: hypothetical protein N0F65_006854 [Lagenidium giganteum] diamond 3564 129 0.992248062015504 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;