RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA977246", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA977246 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3820856 3820856 PRJNA977246_S_NODE_29043_length_232_cov_6.610837_g28051_i0 PRJNA977246 29043 232 6.610837 15.33714184 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 156 1.54e-33   NTclustered gi|1272609481|gb|KY882336.1| 5807 g28051 i0 90.083 52.0646551724138 121 10 52 2 1 120 222 103 Cryptosporidium parvum isolate HS55 28S ribosomal RNA gene, partial sequence blastn 12079 156 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum
9879166 9879166 PRJNA977246_S_NODE_21488_length_293_cov_6910.231061_g20496_i0 PRJNA977246 21488 293 6910.231061 20246.97700873 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 320 6.75e-83   NTclustered gi|820695469|tpe|LN714488.1| 572307 g20496 i0 90.496 71.2457337883959 242 23 83 0 1 242 300541 300782 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 20875 320 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
16254312 16254312 PRJNA977246_S_NODE_35413_length_199_cov_11.894118_g34421_i0 PRJNA977246 35413 199 11.894118 23.66929482 Selenidium pyroidea 2605653 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|1730679298|gb|MN381957.1| 2605653 g34421 i0 100 0.28643216080402 29 0 15 0 1 29 4509 4481 Selenidium pyroidea isolate AK3 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 57 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Archigregarinorida Selenidiidae Selenidium Selenidium pyroidea
19120140 19120140 PRJNA977246_S_NODE_12835_length_417_cov_5.270619_g11862_i0 PRJNA977246 12835 417 5.270619 21.97848123 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 69.4 3.98e-7   NTclustered gi|2785764944|ref|XM_067217517.1| 5824 g11862 i0 93.478 19.9448441247002 46 3 11 0 114 159 1051 1006 Plasmodium brasilianum uncharacterized protein (MKS88_004347), partial mRNA blastn 8317 69.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
22628005 22628005 PRJNA977246_S_NODE_16698_length_350_cov_5.514019_g15706_i0 PRJNA977246 16698 350 5.514019 19.2990665 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 69.4 3.28e-7   NTclustered gi|820694606|tpe|LN714487.1| 572307 g15706 i0 90.385 0.294285714285714 52 5 15 0 52 103 3559846 3559897 TPA_asm: Neospora caninum Liverpool, chromosome chrXII, complete genome blastn 103 69.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
30658039 30658039 PRJNA977246_S_NODE_24853_length_263_cov_12.183761_g23861_i0 PRJNA977246 24853 263 12.183761 32.04329143 Cryptosporidium bovis 310047 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0255   NR XP_067181760.1 310047 g23861 i0 47.1 0.581749049429658 51 25 55.9 1 180 34 370 420 XP_067181760.1 interaptin [Cryptosporidium bovis] diamond 153 43.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;