RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA977246", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 12 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 12 ✖

bioproject 1

  • PRJNA977246 · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2227055 2227055 PRJNA977246_S_NODE_48042_length_158_cov_3.573643_g47050_i0 PRJNA977246 48042 158 3.573643 5.64635594 Verrucomicrobium sp. GAS474 1882831 Bacteria Bacteria 124 2.73e-24   NTclustered gi|1085974270|emb|LT629781.1| 1882831 g47050 i0 81.481 141.487341772152 162 21 100 8 1 158 3537849 3538005 Verrucomicrobiaceae bacterium GAS474 genome assembly, chromosome: I blastn 22355 124 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium sp. GAS474
7329447 7329447 PRJNA977246_S_NODE_48886_length_156_cov_3.897638_g47894_i0 PRJNA977246 48886 156 3.897638 6.08031528 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 171 3.399999999999999e-38   NTclustered gi|2874253779|emb|OY969763.1| 412056 g47894 i0 95.327 95.6153846153846 107 5 69 0 50 156 3831862 3831756 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 blastn 14916 171 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
14022974 14022974 PRJNA977246_S_NODE_6591_length_621_cov_3172.217905_g5816_i0 PRJNA977246 6591 621 3172.217905 19699.47319005 root 1 Root_unresolved Root_unresolved 87 6.6e-17   NR HZV35108.1 2499141 g5816 i0 60 0.942028985507246 65 26 31.4 0 406 600 8 72 HZV35108.1 ParB N-terminal domain-containing protein [Verrucomicrobiia bacterium] diamond 585 87 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
16253914 16253914 PRJNA977246_S_NODE_20633_length_302_cov_8.076923_g19641_i0 PRJNA977246 20633 302 8.076923 24.39230746 Chthoniobacter flavus 191863 Bacteria Bacteria 313 1.17e-80   NTclustered gi|183579828|emb|AM905425.1| 497964 g19641 i0 85.479 138.158940397351 303 40 100 3 1 302 191 490 Chthoniobacter flavus 23S rRNA gene, strain Ellin428 blastn 41724 313 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus
16254439 16254439 PRJNA977246_S_NODE_41493_length_176_cov_4.714286_g40501_i0 PRJNA977246 41493 176 4.714286 8.29714336 Pedosphaera parvula 1032527 Bacteria Bacteria 147 6.619999999999999e-31   NTclustered gi|183579829|emb|AM905426.1| 320771 g40501 i0 82.456 0.971590909090909 171 27 96 3 2 170 266 435 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 171 147 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
16254517 16254517 PRJNA977246_S_NODE_45653_length_164_cov_3.466667_g44661_i0 PRJNA977246 45653 164 3.466667 5.68533388 Pedosphaera parvula 1032527 Bacteria Bacteria 196 5.98e-46   NTclustered gi|183579829|emb|AM905426.1| 320771 g44661 i0 88.415 92.2012195121951 164 17 99 2 2 164 1509 1671 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 15121 196 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
21352885 21352885 PRJNA977246_S_NODE_12537_length_423_cov_5.685279_g11566_i0 PRJNA977246 12537 423 5.685279 24.04873017 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 420 9.699999999999999e-113   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g11566 i0 92.857 76.8605200945626 294 13 68 7 1 289 3558070 3557780 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 32512 420 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
21353003 21353003 PRJNA977246_S_NODE_16877_length_347_cov_5901.251572_g15885_i0 PRJNA977246 16877 347 5901.251572 20477.34295484 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 375 1.7199999999999998e-99   NTclustered gi|2874253690|emb|OY969416.1| 412056 g15885 i0 89.369 67.1440922190202 301 29 86 3 50 347 1316149 1316449 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 23299 375 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
21353121 21353121 PRJNA977246_S_NODE_21097_length_297_cov_6799.847015_g20105_i0 PRJNA977246 21097 297 6799.847015 20195.54563455 Luteolibacter sp. AS25 3135776 Bacteria Bacteria 344 4.06e-90   NTclustered gi|2889346039|gb|CP151837.1| 3135776 g20105 i0 91.566 145.515151515152 249 21 84 0 49 297 454549 454797 Luteolibacter sp. AS25 chromosome, complete genome blastn 43218 344 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. AS25
27158399 27158399 PRJNA977246_S_NODE_46862_length_161_cov_2.924242_g45870_i0 PRJNA977246 46862 161 2.924242 4.70802962 Prosthecobacter 48463 Bacteria Bacteria 51.2 1.23e-5   NR WP_395722112.1 1965333 g45870 i0 64.5 2.98136645962733 31 11 57.8 0 60 152 16 46 WP_395722112.1 universal stress protein [Prosthecobacter sp.] diamond 480 51.6 0.992248062015504 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
27342419 27342419 PRJNA977246_S_NODE_16863_length_348_cov_2.952978_g15871_i0 PRJNA977246 16863 348 2.952978 10.27636344 Luteolibacter yonseiensis 1144680 Bacteria Bacteria 68.9 7.91e-11   NR WP_200351912.1 1144680 g15871 i0 52.2 0.577586206896552 67 31 56.9 1 9 206 559 625 WP_200351912.1 LTA synthase family protein [Luteolibacter yonseiensis] diamond 201 68.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter yonseiensis
31264588 31264588 PRJNA977246_S_NODE_37915_length_189_cov_3.156250_g36923_i0 PRJNA977246 37915 189 3.15625 5.9653125 Verrucomicrobiales 48461 Bacteria Bacteria 101 2.74e-23   NR MBX3742762.1 2562705 g36923 i0 90.9 1.74603174603175 55 5 87.3 0 25 189 131 185 MBX3742762.1 FecR domain-containing protein [Akkermansiaceae bacterium] diamond 330 101 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;